Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0289 |
Symbol | |
ID | 4602545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 343985 |
End bp | 346240 |
Gene Length | 2256 bp |
Protein Length | 751 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639779618 |
Product | putative alpha-1,2-mannosidase |
Protein accession | YP_926170 |
Protein GI | 119773430 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3537] Putative alpha-1,2-mannosidase |
TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAGA TTGCCGCACT GCTGCTGACC GCGTCCCTGG CAGCATGCAA CCAGCAACCC AGCCAGGTGC AAAGCCACGA ACAACAAAAG CCCACCAGCC AGTCACAAAT GGAGCACGCT GCGGATGTGC TCGCCTATGT TGACCCCTTT ATCGGCACCG ATGGCAAGGG TAAAACCTTC CCCGGTGCTA CCGTGCCCCA TGGCATGGTG CAGCTCAGCC CCGACAATGG CCGCACCGGC TGGGACTGGA TAGCGGGCTA CTTCTATCCC GACAACATCA TTGCCGGCTT CAGCCACACC CATTTGTCCG GCACAGGTGC CGGGGATCTG TATGACATCT CCTTTATGCC CCTGACCCGG CCTTTCAAGC GGGTGCAAAC CGAGGGCGGT CCGGCCGACG GCACCATAGT GTCCCATTTC AGCCACGAGC AAGAGCAGGC CAGCCCCGGT TATTACCGGG TCAGATTGCA GGACTACGAA ATCAAGGTGG AGCTGACCGC AGGTGCGCGC TCCGGCCTGC AAAGATACAG TTTTCCGACC ACGGCCACCG AAGGTGTGGT GCGGCTCGAT TTGGGTTATA GCCGCAACTG GGACAAAACC GTTGCCACCC ATGTTGAAAT CATCGATGCC TACAGCATTG GCGGGTATCG CAAATCCACC GGTTGGGCCG AGGATCAGCG GGTCTATTTT TACAGCCGTT TTTCACAGCC CATCGCCAGT CAGCTGTTGT TTGTCGATGG CAAACAGGTC TCCCACACAC AGGCTGAGGC CGACAATATC GCGCTTGAGC TCAACTTCGA TTTGGCCCAG AGCCAATCAA AGGACAGGTC TTTACTGGTG CACACCGCCA TCAGCTCGGT GAGCATAGAT AATGCACTGG CAAACCTTGA GGCCGACGGC AAGCTGCTGG ATTTCCCGGG CACCCTGGCC GCCGCCAAAG ATGCCTGGCG TGGTGAGCTT GCCAAAGTTC GGGTGTCGGC ATCCGAGGAT AACCTCAGGC AGTTTTATAC CGCCATGTAC CATGCCTCAC TCGCCCCACG ACTCTTCTCG GATACCGATG GCAGCTACAA GGGGCCGGAT GGCGCAATCC ATCAAGCCGA AGGCCATCCA CGCTACGAAT TCTTCTCCCT GTGGGATACC TTCAGGGCGC TGCACCCCTG GAAAACCCTT GTCGACCAGG CTCGCACCCG GGAGATGATG GACAGCATGA TGGACCATTA CCGGGTAGCC GGGCGTTTAC CCGTGTGGAT TTTTCAGGGC AATGAAACCG ACATGATGCT GGGCTACCAC TCGGTGCCGG TATTGGTCGA TGCCTATCTG AAGGGCCTTA CCGATATTGA TGGCGAACAC TTGCTTAATG CCGCCCTGCA CAGTGCAAAG CAAGAGGCTT TTGGCCTGGC GAGTTACCAG CAGCTGGGTT TTGTGCCCTA CACAGAGCGC AAGTGGAATG TGGCCCTGAC GCTAGAATAT GCCTTCGATG ACTGGGCTAT CGCACGCCTC GCCAAAGCCT TGGGTAAAGA AGATATTTAT CAGGAATTTG CCACACGGTC ACAGAACTAT CGCCGCCATT TTGACGCCCA AACCGGCTTT ATGCGCGCCC TGGATCCCCA TGGGCAATTC CGTCTCCCCT TCGACCCCAA TGCCTATCAC CCGGAAGACT ACTGTGAGGC CAATGCCTGG CAATACAGCT TCTTTGTACC CCACGATGTG GCGGGCATGA TTGAAATGAT GGGCGGCAGC GCCGCTGTCA GCGCCAAACT GGATGCCATG TTCGGTACCG AGCAGGCGCT GGACGAGTTC CCCGAATGGA TCTCCGGCTA TATCGGCCAG TATGTCCACG GCAACGAGCC CAGCCACCAT GTGCCCTACC TCTATCAATA TCTGGGCGAA GCACATAAGA CCCAGCGTCT GGTGCGGCAG ATAATGCACG AGCTTTACAC CACGGCGCCC GATGGACTGG CCGGCAACGA AGATGCCGGC CAAATGTCGG CCTGGTACCT CTTCAGTGCG CTGGGCTTTT ACCCCGTGGA CCCGGTATCC GGTGAATATG TGCTTGGCAG CCCCGAGGTC GACAGCGCCG ATATCCAGCT TGAAAATGGT AACGTCTTTA AAATTCGTAC AATTAATCAA GGACCTGAAC ATGTCTATGT CAAGCAGGTC ACCTTGAACG GCAAGCCCTT GAACGGATAT ATTTTACGAC ATTCAGATAT TCTGGCCGGT GGTGAACTGG TCTTTACCAT GAGCCCTCAG CCATGA
|
Protein sequence | MKKIAALLLT ASLAACNQQP SQVQSHEQQK PTSQSQMEHA ADVLAYVDPF IGTDGKGKTF PGATVPHGMV QLSPDNGRTG WDWIAGYFYP DNIIAGFSHT HLSGTGAGDL YDISFMPLTR PFKRVQTEGG PADGTIVSHF SHEQEQASPG YYRVRLQDYE IKVELTAGAR SGLQRYSFPT TATEGVVRLD LGYSRNWDKT VATHVEIIDA YSIGGYRKST GWAEDQRVYF YSRFSQPIAS QLLFVDGKQV SHTQAEADNI ALELNFDLAQ SQSKDRSLLV HTAISSVSID NALANLEADG KLLDFPGTLA AAKDAWRGEL AKVRVSASED NLRQFYTAMY HASLAPRLFS DTDGSYKGPD GAIHQAEGHP RYEFFSLWDT FRALHPWKTL VDQARTREMM DSMMDHYRVA GRLPVWIFQG NETDMMLGYH SVPVLVDAYL KGLTDIDGEH LLNAALHSAK QEAFGLASYQ QLGFVPYTER KWNVALTLEY AFDDWAIARL AKALGKEDIY QEFATRSQNY RRHFDAQTGF MRALDPHGQF RLPFDPNAYH PEDYCEANAW QYSFFVPHDV AGMIEMMGGS AAVSAKLDAM FGTEQALDEF PEWISGYIGQ YVHGNEPSHH VPYLYQYLGE AHKTQRLVRQ IMHELYTTAP DGLAGNEDAG QMSAWYLFSA LGFYPVDPVS GEYVLGSPEV DSADIQLENG NVFKIRTINQ GPEHVYVKQV TLNGKPLNGY ILRHSDILAG GELVFTMSPQ P
|
| |