| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0288 |
|---|
| Symbol | |
|---|
| ID | 4602544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 341766 |
|---|
| End bp | 343988 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639779617 |
|---|
| Product | putative alpha-1,2-mannosidase |
|---|
| Protein accession | YP_926169 |
|---|
| Protein GI | 119773429 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAT TCCTGTTTGG TCTGCTCCTG ACCAGCTGCT CTGCCCTGGG TGGCAACAGC
CAGTACGTGA ATCCCTTTAT CGGTACCTCA AACTTCGGCG CTACCCATCC CGGGGCTCAG
TACCCCAATG CCCTGGCCTC GGTGTCGCCG TTCAACGTGG CCCATGGCGG CGAGCAAAAT
AAGTTTGAAA AAGACGCCGC CTGGAACTCC CGGGTGTATA TCCATGAGAA CCGCTATCTG
ACGGGCTTCA GCCACCTGAA CTTAAGCGGC GTGGGTTGCC CCGATGCAGG CGTATTGCTA
CTGATGCCCA CCACGGGCCC GCTCGAACTG GACGCACGGG AATACGGCAG CAGTTACAGC
AATGAGCAAG CCAGCCCCGG CTACTATAGC GCCCAGCTCA ACAAATACGC CGTCAAGGCC
GAAGTCACCA GCAGCCTGCG CACCGGCCTG AGCCGCTTCA CCTTTCCGGC GGGGCAGTCC
AATGTGCTGC TCAATCTGGG GCTGGGACTG ACCAATGAAA CCGGCGCCAG CCTTAAGTGG
GTGTCTGAGC AGGAAGTCGA AGGCAGCCGT ATGCTGGGCA CCTTCTGCTA CCACGACGAA
GATGTGCGGC CGGTATTTTT TGTGGCCCGC TTCAGCAAGG CACCCAAGAC CTTTGGGGTG
TGGAAAAAAA TGCCGCGCTA CCAGAATGTG GAAGCCGACT GGATTGGCTA CAACGACAGC
ATTAAACCCT ATCCGGGCTA TCGTCAGCTC CTGTCCGGCG ATGATATCGG TGCCTGGCTG
AGCTTCGATA CCCGCGAGCA GGAGGCCATC GAGGTCAAGC TGGGCATCTC CTTTGTCAGC
ATGGAAAACG CTAGGGAGAA TCTGGATACC GAGCAGCCCG GGTTTGAGTT CGATAAGCTG
CGGATTGAGG CGCAAAAGGC CTGGGACGCC CTGCTGGACC GGGTCGAGGT GGAGGGCAGT
GATGAGCAAA AAACCTTGTT CTACACCGCG CTGTACCACA GCCTTATTCA TCCCAACATA
TTGCAGGATG CCAACGGCGA TTACCCCTTG ATGGGCCAGC AGGGCGTTGG CAACAGCAAG
CAAAACCGCT ACACGGTGTA CTCGCTTTGG GATACCCACA GAAACGTTCA TCCCCTGCTG
AGCCTGCTCT ATCCCGAATT ACAGGCCGAT ATGGTGCGCT CGGCAGTGGC CATGGCCAAA
GAGAGTGGCT GGCTGCCCAA GTGGGAGCTC TACGGCATGG AAACCCAGGT GATGGTGGGC
GATCCCGCCA CGGCCATGAT TGCCGACAGC TACCTGCGCG GCATCCGGGA TTTCGATGTC
AATGCCGCCT ATGGGGCCAT GGTGCGGGCA GCAGAGCAGC GCGAGCACAA CCTGCTGCGG
CCGGAAAACC CGGATTATCT GACGCTCGGC TATGTGCCAG TGGACGATGA AGGCCCCTAC
GATGGCAGCG TGGCCACCAG CCTGGAATAC TACCTGGCCG ACTTCAACCT GGCACAACTG
GCATTGGCGC TGGGTAAGCA GGAGGACCAC GATAAGTACC TGGCCCGGGC ACTGAACTAC
CGCACATTGT TTGATGCCGA CACCGGCATG CTCAGGCCGA AAAATAGAAA AGGCGAATGG
CTGACACCCT TCGACCCCGA GCTTGGCCGT AACTTCGAGC CCGCCCCCGG CTATATCGAA
GGCAATGCCT GGAATTATCG CTTTTATGTG CCCCACGATA CCCCCGGGCT GATACAGCTG
CTCGGCGGGC CGGAAGCCTT TTTACGCCAA CTGGACGCCA CCTTCGACAC CGGTAACTTC
GATATGGGCA ACGAGCCCGA TATCACTTAT CCCTTCCTGT ACAACTACCT GGAAGGTCAG
AGCTGGCGCA CCTCCCGGCG TGTCAGGGAG CTGATTGCGG CACACTTTGG CAATCATCCC
GGCGGCCTGC CCGGCAACGA CGACACGGGC ACCATGTCCA CCTGGCTCGC GTTTTCCATG
TTGGGCATTT ACCCGGTGAG CCCCGGCATG ATGGACTACG CCCTGTTCCG CCCAAGCTTC
AGCAAGGTGA AGATTCACCT CAGCGCCGAA TACTATCCCG GTAAGCAGTT TGTGATTGAA
AACCCTGTCG GTGACCTTGA CTCGGATAAG CCCGAAGCCT TCACACTAAA CGGCCGCAGC
ATCGACAAAC CCTTTGTGAC CCATGAGGAC ATCATCAAGG GCGGCGTGCT CAAGGTGAAG
TAG
|
|---|
| Protein sequence | MNKFLFGLLL TSCSALGGNS QYVNPFIGTS NFGATHPGAQ YPNALASVSP FNVAHGGEQN
KFEKDAAWNS RVYIHENRYL TGFSHLNLSG VGCPDAGVLL LMPTTGPLEL DAREYGSSYS
NEQASPGYYS AQLNKYAVKA EVTSSLRTGL SRFTFPAGQS NVLLNLGLGL TNETGASLKW
VSEQEVEGSR MLGTFCYHDE DVRPVFFVAR FSKAPKTFGV WKKMPRYQNV EADWIGYNDS
IKPYPGYRQL LSGDDIGAWL SFDTREQEAI EVKLGISFVS MENARENLDT EQPGFEFDKL
RIEAQKAWDA LLDRVEVEGS DEQKTLFYTA LYHSLIHPNI LQDANGDYPL MGQQGVGNSK
QNRYTVYSLW DTHRNVHPLL SLLYPELQAD MVRSAVAMAK ESGWLPKWEL YGMETQVMVG
DPATAMIADS YLRGIRDFDV NAAYGAMVRA AEQREHNLLR PENPDYLTLG YVPVDDEGPY
DGSVATSLEY YLADFNLAQL ALALGKQEDH DKYLARALNY RTLFDADTGM LRPKNRKGEW
LTPFDPELGR NFEPAPGYIE GNAWNYRFYV PHDTPGLIQL LGGPEAFLRQ LDATFDTGNF
DMGNEPDITY PFLYNYLEGQ SWRTSRRVRE LIAAHFGNHP GGLPGNDDTG TMSTWLAFSM
LGIYPVSPGM MDYALFRPSF SKVKIHLSAE YYPGKQFVIE NPVGDLDSDK PEAFTLNGRS
IDKPFVTHED IIKGGVLKVK
|
|---|
| |