| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0149 |
|---|
| Symbol | |
|---|
| ID | 4602406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 171444 |
|---|
| End bp | 172322 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639779461 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_926031 |
|---|
| Protein GI | 119773291 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACT ATTGGCTGCC CTTATTGTTT TGTTTGAGCA TGACCCAAGC CTGGTCGGCA
CCTGAAACGA CCAGCCAGAT TGTATGGGTG GAGTCACAGC GTTCGGCACG CAATGCCAGC
CATGAATTCT ATGTGGATTT GCTGCAACTG GTGCTGGATA ACAGTCGTGA GCAGTGGGGC
GAGGCCAGGG TCGAAGAAGT GAATGGAGAT TTTTCCCAAT TCCGGGCCTT TGCTGCGCTA
AACAGCGGCA TGTTACATGT CTTTTGGGCC GGCACCACTA AACAACGGCA AGAAAAATTC
AAGGCCGTAG AGGTGCCCTT GTTTGCAGGC TTGCTGGGGA TCAGAGTGCC GGTGATCCGC
CGCGACAGGT TAGAAGAGTT TCGAGGCTAT AAAACCTTGG CTGATTGGCG AAGACTAATG
GCATGTCAGG GGGCTCAGTG GCCGGATTCG GACATATTGG AGGTGAATGG TTTCAGGGTC
GCCCGGATAG CCAAATTCGA ACTTATGTAC ACTATGCTTA AGCAGGGACG CTGTGACTAT
TTTCCCCGCG GGCTTAATGA GGTCGGTGCA GAATTGGCGG CCGACGGCCA GCAGGACCTG
GTTGCCTATG AAGGTGTGCT GATTACCTAT CCCTTTCCCA TGTACTTTTT TGTGGGCAAG
AATAACAACG CTTTGTACCA ACGTCTGAGT ACCACGCTGG AGGCCATGGC TGTGAGTGGT
GAGTTGCGTC AATTTCTGTT CAATCACCCC ACCACTGCCG GGCTGTTCCC TTTGGAACGC
TTTGACAACA GTCTCAGGTT CAGATTAACC AATTCCCTGT TGCCGGCCTC GACGCCTTTG
CAGCGTTCGG AACTCTGGCT GCCACTGACT CGCCCCTAA
|
|---|
| Protein sequence | MKHYWLPLLF CLSMTQAWSA PETTSQIVWV ESQRSARNAS HEFYVDLLQL VLDNSREQWG
EARVEEVNGD FSQFRAFAAL NSGMLHVFWA GTTKQRQEKF KAVEVPLFAG LLGIRVPVIR
RDRLEEFRGY KTLADWRRLM ACQGAQWPDS DILEVNGFRV ARIAKFELMY TMLKQGRCDY
FPRGLNEVGA ELAADGQQDL VAYEGVLITY PFPMYFFVGK NNNALYQRLS TTLEAMAVSG
ELRQFLFNHP TTAGLFPLER FDNSLRFRLT NSLLPASTPL QRSELWLPLT RP
|
|---|
| |