Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0139 |
Symbol | |
ID | 4602396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 156138 |
End bp | 157208 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639779451 |
Product | secretion protein HlyD |
Protein accession | YP_926021 |
Protein GI | 119773281 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTATT TTAAATCTCC CCTGCTGGCA TTGGCGCTGA TTATGGGCGG TCAGGTGCTG GCAGCTGATG AGCGTTCCGT CGGCGTGGCC ACAGTGGAAC AGCGCCCCCT GTCACCCAAA CTCATGGTGG TGGGCACTGT GCACAGCCGC AGCCTGGCAC AGCTGACCAC GGGTGTAGCC GGTAAACTGG AGTGGGTGCA GGAAGCGGGC ACCCGGGTCA GCGCAGGTGA GGTGGTTGCC AGGCTGGATG CGACGCCATT AACCCTGCAA CTGGCCGAAC AACAGGCGCT GGTCAATCGG GAAGAAATCG CTCTGGCACG CCTTGAGCGA AACCTGACCC GGCTGGAACG CCTGGCGGCC AGCCAAAGCA TTTCCCGCAC AGAAATCGAC GATACCCGCT CCGAGCGGGA TCTGGCCAAA AGCAGCCTGG AGCTTGCCAG GGTCAGGCTG GATATCATCC GCGATAATCT GGCTCGCACC CAACTCAAGG CCCCCTTTGG CGGCATTGTT ATCTCACGCA GCCATCAGGC CGGTGAAGAT GTGGGCCCCG CCGAGCCGGT ACTAACCATC ACAGACCCCG ACCATCTGGA AATAAGACTC CATGCCCCAC TGAAACACAG TCGCAGGGTG AATATCGGGG ACGAGCTCAA GGTGTATCAC AGCAACGGTG AATTCAGCGC CCGCATCCGT ACCCTGATAC CCGTGTCGGA TGTACGCAGC CAAACCTTTG AAGCCCGCCT CGACCTGCCA CAGGCCATGG CACGGGAAAT CAACATAGGT GAACTGGTGT CCATGGCCCT GCCGATAGCA CCGGCCACCT TAACCACCTT GGTGCCAAGA GACGCGTTGG TACTGCGCTC CAGTGGCGCC AGTGTGTTTC GGGTTACCCC CGAGCAGACC GCTGAGCGTA TTCCCGTGAC CCTGGGCGAC GGTGAAGGCC CCTGGATAGC GGTGCGGGGC GAACTTAACG CCGGAGATAC CCTGGTCATC CGCGGCGCAG AAACCCTGAC CGACGGCATG AAACTCACCG TACAGCAAGC CGCAGCCCAA GCCACTGCCA GCGCCAAATA G
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Protein sequence | MTYFKSPLLA LALIMGGQVL AADERSVGVA TVEQRPLSPK LMVVGTVHSR SLAQLTTGVA GKLEWVQEAG TRVSAGEVVA RLDATPLTLQ LAEQQALVNR EEIALARLER NLTRLERLAA SQSISRTEID DTRSERDLAK SSLELARVRL DIIRDNLART QLKAPFGGIV ISRSHQAGED VGPAEPVLTI TDPDHLEIRL HAPLKHSRRV NIGDELKVYH SNGEFSARIR TLIPVSDVRS QTFEARLDLP QAMAREINIG ELVSMALPIA PATLTTLVPR DALVLRSSGA SVFRVTPEQT AERIPVTLGD GEGPWIAVRG ELNAGDTLVI RGAETLTDGM KLTVQQAAAQ ATASAK
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