| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3125 |
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| Symbol | |
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| ID | 4082711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3277319 |
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| End bp | 3279676 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638011510 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_618161 |
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| Protein GI | 103488600 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGAA CTTTCAGCCT GCGTTCCGCC GCCGCTCTCG CCATCGTCGC GGTGCTCGCC
ACCGCTCCCG CTGTCGCGCA GCCGACATCC GCCGACACGG CGCCGATCCA GCGCGACGAG
GGCGACATCA CGACCTCGCA GGACATCGTC GTCCTCGGCA GCGTCGGCTA TCGGGGCCGC
AGCGACGAGG CCGAACCCGT CCTTTCATAT GACAGCGAGT TTTTCCAGCG CTTCGAGCCG
CTGACCGCAG GCGATGCGCT GAAGCGCGTG CCGTCCGTCA CCTTTCTGTC CGACGTCATC
GAAAGCGACG GTGCGCGCCT TCGCGGCCTG CCGCCGGGCT ATACGCAGAT CCTGATCAAC
GGCGAGCGCG TCCCCGGCAA CGGCGACGAC CGCAGCTTTT TCATGGATCG CATTCCCGCC
GAACTGATCG ACCGCGTCGA GATCCTCCGC TCCTCGTCGG CGCGCCGCAC AGGCGATGCC
GTCGCGGGCA CGATCAACAT CGAACTGCGC GACGGTTTTG AACTCGATGG CGGCTATGTC
CGCGCGGGCG CGCTCTATTT CGACGATGAG GAACTCGAAC CAAGCCTCGG CCTCGTCTAT
GGCGGGAAAG TCGGGCCGGG CCGCCTGCTC GTCGGGCTCA ATTTTCAGGG TCGCCACAAT
CCGAAGCGGA AGCGTTCGCT GCGCTATGGC GATTCCCCCG AGAACGATCC CGATTTCCGG
GTCAACGAGT TCGACAATCG CGAGGACCAG AGCGACACGC GCGACGGCAA GGATTATTCG
GCCAACGCCA GCTATGAGAT CGACGGCGAG ACCACCGGTT TCCGGATCAG CGGCTTCTAC
GTCCGCACCG ACCGCACGGA GACCGAGCGC AGCTTCGAAT ATGACGATCC GACGGCGATC
AGTGGCCCGC TGCCCAGCGG CAATCTGTTG ACCGACAATC GCAACGTTAA CAATATCGAT
CAGGAAAATT ACAGCATCGA CGCCAGATTG TCGCACGATT GGTCGCTCGG CAAGACGACG
CTGCGTCTCG GCCATGCGCG GTTCGACGAC AAGCAGCGCG AGAGCGAGAA TGAGATCGAT
TTCGACGTCG ATTATGACGA TGGCGAAGTG CCGGTGTTCG AACAGGCGTT CACTGCGACC
GACATCGTCG ACAAGGAATA CACCGCCAAG CTCGACCATG AGTTCGACCT TGGTCACGAC
ATCCAGCTTG TGGTCGGCGG CTTCTATCAG AAGAAAAAGC GGAATACCGC GATCCTCGAC
GCGGACGGCG AAGAGGATTT TCCGGGGCTC GAAACCAGCT ATGACCAGTT CGCCGATAGT
CCCGACGACC TGCTTTCGCC CTTCGACCCG CTCGAGCCGA CCGATGGCGG GGTCAGCCGG
ATCGAGGAAC GACGTCTCGA CGGTTTCGCG CTGGTGCAGG GCAAATCGGG CGGGCTGACG
TGGGAGGCGG GCATCCGCTA TGAAACCACG CGCTTCGACA TCACCGACTT CACCGAAGCG
GCAGCGATTC CCACGCAGCG CAATGAATAT GAAAAATGGC TGCCGTCGGC GTCGGTCAAG
TTCGACCTGA CCTCGCGCGA CCGCATCACC GCGTCGGTCG CGCGCACCAA CCGTCGCCCC
GATTTCAACT TCATCTCGCC CGCCCTGCTC GAAGAAGAAG TCGGCGACAG CGACCTGCTC
GGCAATCCGC AACTCGGTCC CGAAACCGCC TGGGGTTTCG ATCTGGGGTA TGAGCGCCGC
ATCGGTCGCA CCGGCATCGT CGGGATCAAT GCCTTCTACC GCGACGTGAC CGACCTCATC
GAACTGACCA ACACCGGCGA AGAGGGGTCG GAAGGCGAGG GCACTTTCGT CTACCAGCCG
CAGAATGTCG GCGACGGCAA GGTGTGGGGC GTCGAGTTCG ATCTTTCGAC CGACCTCGGT
TTCCTCGGCC TGCCCGACAC GGGCCTTTTC GGCAACGTCT CGTGGCTCGA CAGCGAGATC
ACCGATTTTG CGGGCAAGCG CCGCTTCAAC GGCCAGTCGG ACTATGTCTA CAACATCGGC
TTCGTTCAGG ACATCCCGCG CTGGGGCGTT GCTTTCGGCG CGACGCACCG CAAACAGGGC
GCGGCCTATG ACCGTGTGAT CAGCGAGGAA GTGCGCACGA CCTATGGCGC CGACCTTGAA
ATCTTCGTCG AAAAGCGGAT CGGCAGCAAT TTCACGATCC GCGCGGTCGG ATCGAACCTG
TTGAACGGAG CCAAGCGCGA AGTGTTCAAC AAGTTCGACA ATCTCGAAGA CCAGCAGACA
CGCGATTTCG ACGAATATGA GCTCGAAAGC GAAAAGGCGG GGCCAGTGTT CCAGCTGATG
GCGCGCTACG CCTTTTAG
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| Protein sequence | MIRTFSLRSA AALAIVAVLA TAPAVAQPTS ADTAPIQRDE GDITTSQDIV VLGSVGYRGR
SDEAEPVLSY DSEFFQRFEP LTAGDALKRV PSVTFLSDVI ESDGARLRGL PPGYTQILIN
GERVPGNGDD RSFFMDRIPA ELIDRVEILR SSSARRTGDA VAGTINIELR DGFELDGGYV
RAGALYFDDE ELEPSLGLVY GGKVGPGRLL VGLNFQGRHN PKRKRSLRYG DSPENDPDFR
VNEFDNREDQ SDTRDGKDYS ANASYEIDGE TTGFRISGFY VRTDRTETER SFEYDDPTAI
SGPLPSGNLL TDNRNVNNID QENYSIDARL SHDWSLGKTT LRLGHARFDD KQRESENEID
FDVDYDDGEV PVFEQAFTAT DIVDKEYTAK LDHEFDLGHD IQLVVGGFYQ KKKRNTAILD
ADGEEDFPGL ETSYDQFADS PDDLLSPFDP LEPTDGGVSR IEERRLDGFA LVQGKSGGLT
WEAGIRYETT RFDITDFTEA AAIPTQRNEY EKWLPSASVK FDLTSRDRIT ASVARTNRRP
DFNFISPALL EEEVGDSDLL GNPQLGPETA WGFDLGYERR IGRTGIVGIN AFYRDVTDLI
ELTNTGEEGS EGEGTFVYQP QNVGDGKVWG VEFDLSTDLG FLGLPDTGLF GNVSWLDSEI
TDFAGKRRFN GQSDYVYNIG FVQDIPRWGV AFGATHRKQG AAYDRVISEE VRTTYGADLE
IFVEKRIGSN FTIRAVGSNL LNGAKREVFN KFDNLEDQQT RDFDEYELES EKAGPVFQLM
ARYAF
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