| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3029 |
|---|
| Symbol | |
|---|
| ID | 4083037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3174203 |
|---|
| End bp | 3176962 |
|---|
| Gene Length | 2760 bp |
|---|
| Protein Length | 919 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638011415 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_618066 |
|---|
| Protein GI | 103488505 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.709462 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT CTTCCCTTCA TGCTGCCCGC CTGCTGCGCA CGACGGCGAT GGGCGTGTCG
ATTGTGATCG CGAGCATGGC GGCGCCTGCG CTGGCGCAGG ACAGCGGCGC CGATACGGCG
ACCGACGACA GCGGCGACGC GCCGATCGTC GTCACCGCGC AGGGCCGTTC GCAGCTTCTG
TCCGACGTGC CCGTCGCCAT TTCGGCGGTC AGCGCCGAAA CGCTGCAGAA CAGCGGCGCG
AACGACATTC GCCAGCTCAA TCAGGTGGCG CCGTCGCTGC TCGTTTCGTC GACCGGCAGC
GAAGCCAATG GTTCGGCGCG TATCCGCGGC ATCGGCACGG TCGGCGACAA CCCCGGCCTC
GAAAGCTCGG TCCCGGTCTT CATCGACGGC GTCTATCGCT CGCGTTCGGG CATCGGTCTC
AACGAACTGG GCGAGATCGA CCGGGTCGAG GTGCAGCGCG GACCGCAGGG CACGCTCGGC
GGCCGCAACT CGTCGGCGGG CCTCATCAGC ATCTATTCGA AAAAGCCCGA TTTCCAGTTC
GGCGCTTCGG GTGAAATCAC CTATGGCAAT TATGATTATT GGCGCCTCGG CGGCAGCGTC
ACCGGGCCGA TCAGCGACAC GCTCGCCGCG CGCATCGACG GCATCTGGGT GAAGCGCGAC
GGCTTCTATC GCGACGCGAC CAACAACACC GACGTCAACG ACCGCGACCG TTATTTCACG
CGCGGCCAGC TGTTGTTCGA GCCGACCGAC GCGCTGTCGA TCCGGCTGAT CGCCGACTAT
ACCTTCCGCG ATGAAAAATG CTGCGCCGCC ACCTATGTCG ACAGCAGCGT CAATCCTTTC
ATCGGCAACC TCAACAATCC GGGCGTGCCG GTTACGCCGA CGACGAACAA CATCATCCGG
GTGCTCGCCG ACCTCGGTCA GCCGCTCAGC GCTTTCAACC AGGGATACAG CCGCGACATT
TCGGTCACCC CCGGCCGCAG CTATGCGGGC GAAACCAAGG ACTACGGCTT CTCGGGCCAG
ATCGATTATG ATTTCGGCGG CGCGACGCTG ACCTCGATCA CCGCTTATCG CGAATATCGG
TCGAGCCAGG CGTCGGACAC CGACTATGGC ACGGTCGACA TCCTCTATCG TGCGCCCGAC
GATGACGCCT ATCGCCAGTT CCACACCTTC ACGCAGGAAC TGCGCCTCAA CGGCGAGGCG
TTCGACGGCA AGCTCGACTG GCTCGTCGGC GGCTTCTTCG CCAATGAAAA GCTGACGGTG
CGCGACAATC TGCGTTTCGG CAGCCAATAT GGCCGCTTCG CCAATTGCCG CATCATTTCG
GGCGGCGGGC TGGCCGGTCT CTATTCGCCG ACGTCGCCGC TCTGCGTCGT TCCCGGCGTC
GGTCCCGCGA CCATCGCCGC CGCCAGCGGC GCGTCGGGGC CCGACATCGT CGCGGCTTTC
ACCGCCCTCG ACGGCCTCAA CGACCGTGGC ACAATCAACG ACCGCTATCG GCAGAATGGC
ACGAACTGGG CGCTGTTCAC GCACAATATC GTCCACATCA CCGACCAGCT CGATTTCACC
TTCGGCGTGC GTTACACGCA CGACAAGAAG AAATTCTCGG CGGCCTTCAC CAACGACAAC
ACGGCCTGCA CGACGATCCA GGGCCTCGTG CTCGACGATC TGGCGAGCCC CAACGCCACC
GCGCGCGCGC TCGCGGGCGC GCTGATCGGG CTCGGTTGCC AGGGCAATTC GACCGCCGAG
CTCAACGGCG TTTCGATCCG CGACAGCCGC AGCGAGGACG AATGGACCGG CACCGGCATT
CTGTCGTACA AGCCGATGGA CGACCTTCTG CTCTATGCCA GCTATTCGCG CGGCTACAAG
GCGGGCGGCT TCAACCTCGA CCGCTCGGCG CTCAAGTCGC CGATCCTGCC GTTCGGCGGG
CAGGCCGGGG CGCAGTCGCT CGTCGGCAAC CTCCAGTTCG ATCCCGAACT GGTCGATGCC
TATGAAATCG GCGCCAAATA TTCGACGGGC CCGTTCAGCC TCAGCCTTTC GGCCTTCCGG
TCCGATTTCA GCAACTTCCA GCTGAACACC TTCAACGGCA GCGTGTTTAT CGTCCAGACG
GTCAACGGCT GCGGCGGCGA CCTTGTCGGT GGTCCCGATG CGGATACGGA CACCAGCAAC
ACGACCGGCG CGTGCGCCAC CGACGATGTC AGCTGGGGCG TCCGTGCACA GGGTTTCGAG
CTTGAAGCCT CGCTGGTTCC GGCGCGCAAT TTCCGCATGG CGGCGGGCCT GACCTATGCG
CGCACCAAAT ATCGCAAGGA CCTGGTCGGC AACAAGAATG GCGACCCGCT CGACGCGGCG
CTGCGCAAGC TGCCCGGCGA CAATCTGTCG AACGCGCCCG AACTCGTCGC GACCGGCAGC
ATCAGCTGGA CGCCCGACAT CGGCAGCAGC GGCCTCACCG GCCTCGTCTA TATCGACGGC
CGCATGACCA GCGATTACAA CACCGGCTCC GACCTCTTCC CGCAAAAGGA ACAGGACGGC
TATGCGCTGT TCAACGCGCG CCTCGGCGTG CGCGGTCCCG ACGAGAAATG GGCCGTCGAA
CTCTGGGCGC AGAATCTGTT CAACAAGCAA TATGCGCAGG TTGCGTTCAA CTCGCCCTTC
CAGGCGGGTG CATCGTCGGC ACCCTTCACC GACCCGCAAT TTCCGGGCGG GCGCCAGATC
TTCTCGCAGT TCCTCGCCGA ACCGCGCACC TATGGCGTGA CGTTGCGCGG CAAGTTCTGA
|
|---|
| Protein sequence | MKSSSLHAAR LLRTTAMGVS IVIASMAAPA LAQDSGADTA TDDSGDAPIV VTAQGRSQLL
SDVPVAISAV SAETLQNSGA NDIRQLNQVA PSLLVSSTGS EANGSARIRG IGTVGDNPGL
ESSVPVFIDG VYRSRSGIGL NELGEIDRVE VQRGPQGTLG GRNSSAGLIS IYSKKPDFQF
GASGEITYGN YDYWRLGGSV TGPISDTLAA RIDGIWVKRD GFYRDATNNT DVNDRDRYFT
RGQLLFEPTD ALSIRLIADY TFRDEKCCAA TYVDSSVNPF IGNLNNPGVP VTPTTNNIIR
VLADLGQPLS AFNQGYSRDI SVTPGRSYAG ETKDYGFSGQ IDYDFGGATL TSITAYREYR
SSQASDTDYG TVDILYRAPD DDAYRQFHTF TQELRLNGEA FDGKLDWLVG GFFANEKLTV
RDNLRFGSQY GRFANCRIIS GGGLAGLYSP TSPLCVVPGV GPATIAAASG ASGPDIVAAF
TALDGLNDRG TINDRYRQNG TNWALFTHNI VHITDQLDFT FGVRYTHDKK KFSAAFTNDN
TACTTIQGLV LDDLASPNAT ARALAGALIG LGCQGNSTAE LNGVSIRDSR SEDEWTGTGI
LSYKPMDDLL LYASYSRGYK AGGFNLDRSA LKSPILPFGG QAGAQSLVGN LQFDPELVDA
YEIGAKYSTG PFSLSLSAFR SDFSNFQLNT FNGSVFIVQT VNGCGGDLVG GPDADTDTSN
TTGACATDDV SWGVRAQGFE LEASLVPARN FRMAAGLTYA RTKYRKDLVG NKNGDPLDAA
LRKLPGDNLS NAPELVATGS ISWTPDIGSS GLTGLVYIDG RMTSDYNTGS DLFPQKEQDG
YALFNARLGV RGPDEKWAVE LWAQNLFNKQ YAQVAFNSPF QAGASSAPFT DPQFPGGRQI
FSQFLAEPRT YGVTLRGKF
|
|---|
| |