Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2999 |
Symbol | |
ID | 4082943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 3141195 |
End bp | 3142649 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638011384 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_618037 |
Protein GI | 103488476 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.167711 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTGG GTCCGCGCCT CGATCTCCGC CAGTCGCAAT CGCTGGTGAT GACGCCGCAG TTGCAGCAGG CGATCAAGCT GCTGGCGCTG TCGAACCTCG AGCTTGAGGC CTATCTGGCC GAGGCGTTGG AAGGCAATCC GCTGCTCGAC ACGGGCGCAC CCGACAGCGA GGGCGGGGGC GACGAGCCCG ACGGCGATGC GCCGCCCGCG GCGGAAACGC CTGCCGACAC CGATCGGGCG CTGGCGTCCG ATGCCGGCAC CGCCGACGAC CTCGACGTCG ATTTCACCGA AGAGCGTTTC CATCATGACA GCGCGAGCGA CAGCGTCGGC CTGTCGGGTG CGGGCGAGGA CGTGGATTTC GACAGTTTCG CGGAGGCCGA GGGCTCGCTC CACGACCATC TGCTCGCGCA GGTCGGCGAG CGGCTCGACG GGATCGAGGC GATCATCGCG GGCCAGCTCG TCGCGCTGAT CGACGAGGCG GGCTATCTGC GCGCCGACCT TGCCGAACTC GCCGCACAGC TCGGCGTGCC CCTGGCGCTG GTCGAGGCGG TGCTGCGGGT GGTCCAGGGC TTCGACCCCG CGGGCGTCGG CGCGCGCGAC CTCGCCGAAT GTATCGCCAT CCAGGCGCGC GAGGCCGACC GCTATGACCC CGCGATGGCG ACGATGATCG CGCACCTCGA TCTTGTCGCC AAGGGCGCCT TCCCGCAACT GAAGCGCATC TGCGGCGTCG ATGACGAGGA TCTGGCCGAC ATGATCCGCG AACTGCGCGG CTATGATCCC AAACCGGGCT TCAGGTTCGG CGGCTCGCCG GTGCAGGCGG TCGTTCCCGA CCTGTATGTC CGGCGCACCG CGGCGGGCTG GGCGGTCGAG GTGAACAGCG CGACCCTGCC GCGGCTGCTC GTCAACCGCC GCTATTACAA CGAACTCGCC GCGGGCGCGG CGGCAAAAAG CAAGGCGTGG CTGTCCGAAC AGCTTGCCGG CGCCAACTGG CTGGTGCGCG CGCTCGACCA GCGCCAGCGC ACGATCGTCA AGGTGGCGAG CGAGATCGTC AAGCAGCAGG AGGGGTTTTT TCTGCACGGC GTCGCGCATA TGCGGCCGCT GACCTTGCGC CAGGTCGCCG AGGCGATCGG GATGCACGAA TCGACCGTCA GCCGCGTCAC CAGCAACAAA TATCTGTCGT GCCCACGCGG CCTGTTCGAG CTCAAATATT TCTTCTCGTC GGGCATATCG GCGACCGAGG GCGACGGCGC GGTGTCGGCC GAGGCGGTCA AGAGCCGGAT CAAGGCGTTG ATCGAGGGCG AGGACGCGCG CGCGATCCTG TCCGACGAGA CGATCGCGCA GAAACTGTCG GCCGAAGGAT TCGACATCGC GCGGCGCACC GTCGTCAAAT ATCGCGAGGC GATGGGTTAT GGCTCGTCGG TGCAGCGACG GCGGCAGAAA GCGCTGGCGG GATAG
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Protein sequence | MALGPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLELEAYLA EALEGNPLLD TGAPDSEGGG DEPDGDAPPA AETPADTDRA LASDAGTADD LDVDFTEERF HHDSASDSVG LSGAGEDVDF DSFAEAEGSL HDHLLAQVGE RLDGIEAIIA GQLVALIDEA GYLRADLAEL AAQLGVPLAL VEAVLRVVQG FDPAGVGARD LAECIAIQAR EADRYDPAMA TMIAHLDLVA KGAFPQLKRI CGVDDEDLAD MIRELRGYDP KPGFRFGGSP VQAVVPDLYV RRTAAGWAVE VNSATLPRLL VNRRYYNELA AGAAAKSKAW LSEQLAGANW LVRALDQRQR TIVKVASEIV KQQEGFFLHG VAHMRPLTLR QVAEAIGMHE STVSRVTSNK YLSCPRGLFE LKYFFSSGIS ATEGDGAVSA EAVKSRIKAL IEGEDARAIL SDETIAQKLS AEGFDIARRT VVKYREAMGY GSSVQRRRQK ALAG
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