| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2490 |
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| Symbol | |
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| ID | 4081366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2630441 |
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| End bp | 2632330 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010868 |
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| Product | Type IV secretory pathway VirD4 components-like protein |
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| Protein accession | YP_617530 |
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| Protein GI | 103487969 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGATC GGGACCAGCG TATCCATGCC GACGCGCTGC GGCGCCACTG GCGATCGAAC
CAGGTCCGGC GGTTCAAGCG CCATGCGATC ATCTTCGCGG CATCGATCGC GCTCGGCGGC
CTGACGCTCC CCTATCTGAT GCTGACGCCG ACGACGATGC AGGCGACCGG GACCTGGTAT
GTCGCGCGAT TGAAGACGTG GATATCGAGC GGCACCGAAG CCGAACCGGG CGTCATGATC
AGCGGTGGAG GAGAGCGCTA CGAGGCATCG GCTCGATTGG TCGCGGCGCA TCCCTATTAT
CGCCGGTCGG CCGACACGGT GATTGCCTTC TTCATACGAG GATGCTTGCT GGGGTTCATC
GCCTGGCTGG CGGGCCTGAT CTTGCTGCGC GGCGCGATGG CACGGCGGCG CGAACTCATG
CTTCGCGATC GCGTGATCGG GGGGACGATC GTTACGACCG AGAAGAAGCT CGCGCAGCTG
ACGCGTGCCG AAGCAGGGGA CCATGCCCTG GCCATCGCGA CGGTGCCCAT GCCGCCACGC
CTCGAAACCC GCCACATGGC GATGGTCGGC ACGACCGGAA GCGGAAAGAC CACGGTGCTG
CGTCAGATAC TCGATGGCGT CGAGGCGCGC GGCGAGGCGG CGCTCGTCTA CGACACGAGC
GGTGAGTTCG TCGCCCAATA TTATGATCCC CGGCGCGGCG ACATCATCCT AAATCCGTTC
GATGCGCGCT GCGCTATTTG GACGCCCTTC GCCGAGATTG CGCATCCGGC GGATGCCGAC
CGCATCGCGC AGCAGCTTAT CACCGAGACC GGACAGCATG ATCGCGACGT GTGGCTCGAA
ACGAGCCGCA TCCTCGTCGC CAACATGATC CGCGCGCTGT GGCGCGAGGG CAAATGCACC
CTGCCCGATC TGCTCCATGC ATTGCAGGTG CGGTCAAAGG ACGATCTCAA GCTATGGCTG
GGGAACAGTT CGTCGGCGCG CACCTTCGCT GACGATGCCG ACCGCGCGAC GGGAAGCGTG
CTCTTCATGC TCGCCAAGGC CGCGAACCTC ATCCAGTTCC TGCGCATCGA CGAGGGCAAG
GAGACGGCCT TTTCTTTCCG CGATTTTTTA TCGGGGCTCG ACATGCATCC CGGTCCGAAG
CCCTGGATCT TCGTGCCGCG GAAAGAGGAT TATTTCGAGG CCTCGAAGCC GCTGCTTGCC
TGCTGGCTCG AATGCGCCGC GAGCGCCCTG CTCGGGCATT CGCCCTCGGC CGAGCGCCGC
CTCTGGTTCA TCCTCGACGA ACTCGCCGAC CTGCCGCGCG TCGACAATCT CGCGCGGCTG
CTACCCGAGG GGCGCAAGTT CGGGGCGGCG GTCATCCTCA CCTTTCAGGC GATCGGGCAG
ATGCGACATC GCTACGGACA GGATTTGTCC GAATCGATGC TCGGCTGCTG CAACACCAAG
CTGTTCCTCC AGATGACCGA CAGCGAATCC CGGCAATGGG CGAGCGACAC CATCGGAAGC
TGCGAGGTCG AGCTGCCGAC GATGACCGAT GCCCTCGCCG ACGGCGACTA CAAGCCGCGC
ACGACGCTCG GCCGCCAGCG CAAGGTCCGG CCCGCCGTCC TCGAGAGCGA ACTGCGCCTT
CCCAGGCATC GCGGCTATTT GCTGTTCCCC GATGGATTGC CGGTCGCGCG CATCGCGCTC
ACCGACGACC ATATCGTGCG GCGCGGCAAG GCGCGCCAGC TCGGATATGT CGCGGGCGAT
CCCACGACCA GCCTCTGGCA GCAGTCCGTC GAAGCGCCGC CGGTCGGGAC ACCGCCGGTT
GAAGCGGAGC CCGCCGTGCA ACCATCGACG GTGCCGCCCA CCGAGCCGGA GCCGCCGAAA
CCACAGCCGA GCGGCGACGG ACCAGTCTGA
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| Protein sequence | MRDRDQRIHA DALRRHWRSN QVRRFKRHAI IFAASIALGG LTLPYLMLTP TTMQATGTWY
VARLKTWISS GTEAEPGVMI SGGGERYEAS ARLVAAHPYY RRSADTVIAF FIRGCLLGFI
AWLAGLILLR GAMARRRELM LRDRVIGGTI VTTEKKLAQL TRAEAGDHAL AIATVPMPPR
LETRHMAMVG TTGSGKTTVL RQILDGVEAR GEAALVYDTS GEFVAQYYDP RRGDIILNPF
DARCAIWTPF AEIAHPADAD RIAQQLITET GQHDRDVWLE TSRILVANMI RALWREGKCT
LPDLLHALQV RSKDDLKLWL GNSSSARTFA DDADRATGSV LFMLAKAANL IQFLRIDEGK
ETAFSFRDFL SGLDMHPGPK PWIFVPRKED YFEASKPLLA CWLECAASAL LGHSPSAERR
LWFILDELAD LPRVDNLARL LPEGRKFGAA VILTFQAIGQ MRHRYGQDLS ESMLGCCNTK
LFLQMTDSES RQWASDTIGS CEVELPTMTD ALADGDYKPR TTLGRQRKVR PAVLESELRL
PRHRGYLLFP DGLPVARIAL TDDHIVRRGK ARQLGYVAGD PTTSLWQQSV EAPPVGTPPV
EAEPAVQPST VPPTEPEPPK PQPSGDGPV
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