| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2383 |
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| Symbol | |
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| ID | 4080536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2510440 |
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| End bp | 2512629 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638010763 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_617425 |
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| Protein GI | 103487864 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.977643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.393038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCCG CCAACACGGT ACAGCCGCTC GTTCGCCGGT TTTCCCGACC TTCTTCCCGC
CGCTGGCCCC ACGCGCTCGC ATGGGCCGCC CTCGCGCTCC TCATCCTCAC CACCATCGCG
CACCTCGCCA CCAGACCGCC GCCCATGCCC GCCTACGCCG CCGTCCGCGC CGCCTGGCAG
CCCAGCGAAG CCTGGCTCTA CGACCGCGAC GGCCACCTCC TCGACAGCGA GCGCGTCGAT
TTCGAGCGCC GCCGCCTTGC GTGGGTGCCG CTGCAAGACA TCAGCCCCGC CGTCCGCACC
GCCGTCGTCC AAAGCGAGGA CCGCCGTTTC TGGTCGCATG GCGGGGTCGA CTGGCTCGCA
GTCGCCAGTG CCGTCCGGGC GCGCCTGACA ATCTTGGGGG GGACCGGCAA TCGCTCGCGC
GGCGCCTCGA CGCTCGCGAT GCAGCTCGCC GCCTTTCTCG ACCCCGGCCT CGCGCAGCCC
GGCCAGCGCG ACTGGCGCGC CAAGCTGCGC CAGATGCGCG CCGCGCAGCA TCTCGCCGAT
GCGTGGACGC ACGAGCAGAT GCTCGAAGCC TATCTGAACC TCGTCCCCCT GCGCGGCGAG
GCGCAGGGGA TCGGCGCGGG CGCGGCGAGC CTGTTCGGCA AGGCGCCGGC CGACATGAAC
CGCACCGACG CCGCGCTCTT CGCGGGGCTG CTCCCCAGCC CCGGCGCGGG CGCCGACGCG
CTCGCCCGCC GCGCGTGCCG TATCGCTGCG ACACCCGACT GCACCGCGAT CCGCGCCGCC
GCCGCGACCC TCGTGTCGGG CGAGCACGCT GCGCGCGCCG ACCCCGGCCT TGCGCCGCAC
CTTGCCGTGC GCCTGCTCGA CAAACCCGGC AAGCGCGTCA CCACCACCAT CGACCGCCGC
ATCCAGGCCG CCGCGATCGT CGCGCTGCGC CGCCAGCTCG CGGGGCTCGG TTCGGACCGC
GTCCGCGACG GCGCGGTCGT CGTGCTCGAC AACGCCACCG GCGACGTGCT CGCCTATGTC
GGCGGCGTCG GGTTGAAATC GACCGCCGCC TCGGTCGACG GTGCCAATGC GCGGCGGCAG
GCGGGATCGA CGCTCAAGCC GCATCTCTAC GCGCAGGTGA TCGAACATGG CTGGCTCACC
GCCGCGTCGA TCCTCGACGA CAGCCCGGTT CAGCTCGACA CCGCCTCCGG CCTCTATGTC
CCCAAGAATT ACGACCGCAG CTTCAAGGGG CCGGTCAGCG TCCGCCACGC GCTCGCCGCC
TCGCTCAACG TCCCCGCCGT CCGCGCGCTC GTCATCGACG ACGTCCAGCA ATTCCGTGAC
CGCCTCTGGG CGCTCGGCTA TCACGGCCTC GTCGAGGATG GCGAGTATTA CGGCTTCTCC
CTGGCGCTCG GATCGGCCGA AGTTTCTTTG GTCGAACAAG CCAACGCCTT TAGAACATTG
GCAAATAACG GAAACTGGTC CCCCGTCCGC TATCACCCCA CGCGGCACCT TCGACACCAT
CCGCCGCGCC GGATCGTCAG CCCCGCCGCC GCCTTCATCG TCGGCGACAT CCTCGCCGAC
GCCGCCGCGC GCACCGACGC CTTCGGCGCC GACAGCGCGC TCCGCCTCCC CTTCTGGGCC
GCCGCCAAGA CGGGGACGTC AAAGGGGATG CGCGACAATT GGTGCATCGG CTGGTCGGAC
CGCTTCACCG TCGCGGTGTG GGTCGGCAAT CTGGAGGGCG ATTCGATGCG CGCCGTCTCG
GGCACCTCGG GCGCCGCCCC CGTCTGGCGC GACGTGATGC TTGCGCTCCA CGCCGGGCGT
CCCGGCAAGC CACCCGCGAT GCCCGCGGAG GTCGAGGTGC GGCGGATCAC GCTCCCCGGC
ACGCGCGAGC CGCCGCGCCG CGAGTATTTC GTGCGCGGCA CCGCGCAGAA TGAAATGGCG
GCCGCGCCCG CCATCGCGCG CCGTCCGCGC ATCACCAGCC CGGTCAGCGG CAGCGTCTAT
GCGCTCGACC CCGACATCCC GCCGGACCGG CAACGGCTGG CGGTGACGGT CAGCGGCGCG
GTCGCCGGAT ATCGGCTGAT TCTCGACAAA AAACCGCTCG GCGACGCCGA TGCGGGAGCG
CAGATCATGC CGCGTCCGGG CAGCCATATG CTCGCGCTCG TCGATCCCGG CGGGCGAACG
ATCGACCGCA TCCGCTTCAC GGTGCGATAA
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| Protein sequence | MPAANTVQPL VRRFSRPSSR RWPHALAWAA LALLILTTIA HLATRPPPMP AYAAVRAAWQ
PSEAWLYDRD GHLLDSERVD FERRRLAWVP LQDISPAVRT AVVQSEDRRF WSHGGVDWLA
VASAVRARLT ILGGTGNRSR GASTLAMQLA AFLDPGLAQP GQRDWRAKLR QMRAAQHLAD
AWTHEQMLEA YLNLVPLRGE AQGIGAGAAS LFGKAPADMN RTDAALFAGL LPSPGAGADA
LARRACRIAA TPDCTAIRAA AATLVSGEHA ARADPGLAPH LAVRLLDKPG KRVTTTIDRR
IQAAAIVALR RQLAGLGSDR VRDGAVVVLD NATGDVLAYV GGVGLKSTAA SVDGANARRQ
AGSTLKPHLY AQVIEHGWLT AASILDDSPV QLDTASGLYV PKNYDRSFKG PVSVRHALAA
SLNVPAVRAL VIDDVQQFRD RLWALGYHGL VEDGEYYGFS LALGSAEVSL VEQANAFRTL
ANNGNWSPVR YHPTRHLRHH PPRRIVSPAA AFIVGDILAD AAARTDAFGA DSALRLPFWA
AAKTGTSKGM RDNWCIGWSD RFTVAVWVGN LEGDSMRAVS GTSGAAPVWR DVMLALHAGR
PGKPPAMPAE VEVRRITLPG TREPPRREYF VRGTAQNEMA AAPAIARRPR ITSPVSGSVY
ALDPDIPPDR QRLAVTVSGA VAGYRLILDK KPLGDADAGA QIMPRPGSHM LALVDPGGRT
IDRIRFTVR
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