| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2275 |
|---|
| Symbol | |
|---|
| ID | 4080732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2396158 |
|---|
| End bp | 2396907 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638010654 |
|---|
| Product | 16S ribosomal RNA methyltransferase RsmE |
|---|
| Protein accession | YP_617317 |
|---|
| Protein GI | 103487756 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCGA CTCCCGCCTG GCCGCCCGCC AGCACGCCCC GCCTGTTCAT CGACCAGCCG
CTCGGCGCCG GCAGTGCGCC CGTGATCGAC GGCGCCGCGG CCCATTATCT GCTCGGCGTC
ATGCGGCTGA AGGCGGGCGA TCCGGTGCTG CTCTTCGACA ACCGCAGCGG GGAATGGCTT
GCGGTCGTCG CCGACGCCGC CAAACGCTCG GTTACGCTGC GCATCGAACG CCACATGCGC
GACATCGAGG CGGTGCCCGA CCTCTGGCTC TGCTTCGCGC CGGTGAAAAA GGCGCGGCTC
GACTGGATCA TCGAAAAGGC GACCGAGCTC GGCGTCCGCC GCCTCCAGCC CGTGATGACC
GAACGCACGA TCGTCGAGCG CGTCAGGCGC GAGCGGCTGG AGGCGCAGAT CATCGAGGCG
TGCGAACAAT GCGGCCGCAC CGCGCTCCCC GCGCTTGCCG AGCCCGTCAA GCTGCCGCAG
CTGCTGAAGG CCTGGCCGGC GGAGCGCGCG CTGCTCTTCG CCGACGAAGC GGGCGGCGTG
CCGATGGCGC GCCTCGCCGC TCCCGCCCCC GCCGCGATCC TCACCGGCCC CGAAGGCGGC
TTCACCGACC GCGAGCGCGC GCTGCTGGCC GCGCATCCCG CGGTCCACCG CCTCGCCCTT
GGCCCCCGCA TCCTCCGCGC CGAAACCGCC GCCATCGCGG CCACCTCCCT GTGGATGGCG
CAGCACGGCG ACTGGACGGA CGAAGCATAG
|
|---|
| Protein sequence | MPATPAWPPA STPRLFIDQP LGAGSAPVID GAAAHYLLGV MRLKAGDPVL LFDNRSGEWL
AVVADAAKRS VTLRIERHMR DIEAVPDLWL CFAPVKKARL DWIIEKATEL GVRRLQPVMT
ERTIVERVRR ERLEAQIIEA CEQCGRTALP ALAEPVKLPQ LLKAWPAERA LLFADEAGGV
PMARLAAPAP AAILTGPEGG FTDRERALLA AHPAVHRLAL GPRILRAETA AIAATSLWMA
QHGDWTDEA
|
|---|
| |