Gene Sala_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2163 
Symbol 
ID4080197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand+ 
Start bp2274208 
End bp2274792 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content66% 
IMG OID638010541 
Productcarboxymuconolactone decarboxylase 
Protein accessionYP_617205 
Protein GI103487644 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.175503 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.568346 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCCTAG ACCAACCGCG CATCGAGCCG GTCGATCTGG ACCGGCTCGA TGCCGACCAG 
CGCACCGCGC TAGACCCCTT CCTCGCCAGC GATGGCGGCA AGGTCGGGGG CGGCAAGATC 
CTCAACATCT TCCGCACGCT GGCGCATGCG CCCAGGGCGC TCACGGCCTT CCTCGCGTGG 
GGCAACTATA TCCTGTCGCG GCGCAATGCG CTGAGCCCAC GGAATCGCGA ACTCGTCATC 
CTGCGCACCG GCTTTAACTG CCGTTCGGGT TACGAGTGGA CGCAGCACAG GCGCATCGGG 
CTCGATTGCG GATTGAGCGA GGACGAGATC GCCCGGATCA AGGCGGGACC CGACGCGGGC 
GGCTGGAACG ACCTCGACCG CGCCATGCTG CGCGCGACCG ACGAACTCAC CGCCGACCAT 
TTCGTCAGCG ACACGACCTG GGCCGCGCTC GCGCCGCTCG GCGACAAGGG ACGGATGGAC 
CTGGTGATGA CGGTGGGGCA ATATACGCAG GTCTCGATGA TCCTGAACAG CTTCGGCATT 
CAGGTCGAGG AAGGATGGGA GGTCGACCCC GACCTCAAGG CCTGA
 
Protein sequence
MRLDQPRIEP VDLDRLDADQ RTALDPFLAS DGGKVGGGKI LNIFRTLAHA PRALTAFLAW 
GNYILSRRNA LSPRNRELVI LRTGFNCRSG YEWTQHRRIG LDCGLSEDEI ARIKAGPDAG 
GWNDLDRAML RATDELTADH FVSDTTWAAL APLGDKGRMD LVMTVGQYTQ VSMILNSFGI 
QVEEGWEVDP DLKA