| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1952 |
|---|
| Symbol | |
|---|
| ID | 4080501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2057358 |
|---|
| End bp | 2060021 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638010329 |
|---|
| Product | surface antigen (D15) |
|---|
| Protein accession | YP_616997 |
|---|
| Protein GI | 103487436 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0467846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTCAC ACAAAATCTT GGGCCGGACA CAGCTGTCGG TGGCTCTTCT GGCCGGTACG
ATGCTCAGCG CGCCGCTGAT GGCGCAGGAT GTTGCGCCGC CAACCGTGCC CGCACCGACC
GTTCCCGCGC CCGCGCCCGA AGCGGCGCCG ACCGCGACGA CGATCCAGTC GATCACCGTC
ACCGGCAACC AGCGGCTCGA GGCGCAGACG ATCCTGTCGT ACCTGCGCTT GCGCGTCGGT
CAGACCTATG ACCGTGCGAC GCTCGACCAG GCGCTGAAGG ACCTCGCCGC GACCGAATTG
TTCAAGGATT TCCAGATCAC CGACAACAAT GGTGCGCTGC AGATCCAGGT GACCGAAAAC
CCGGTGATCA ACCGCGTGAT CCTGGAGGGT AACAAGCGGC TCAAGGAAGA CAAGATCCGC
CCGGAGATCA AGCTCGCGCC GCGCCAGATT TTCACCCGGT CCAAGGTGCG CGCCGACGTC
GCGCGCATCA TCGAGCTGTA CAAGCGCCAG GGCCGTTTCG CCGCGACCGT CGAGCCCAAG
ATGGTGTCGC TCGACCAGAA CCGCGTCGAT GTGGTGTTCG AGATCAACGA AGGGCCGAAA
TCGAAGGTTC GACAGATCAA CATCATCGGC AACGAAAAGT TCAGCGACGG CGACCTCAAG
GACGAGATGG CGACGAAGGA AACGGGGTTG CTCACGATCC TGTCGTCGAA CACCAGCTAT
GACCCCGACC GCCTTGCCTA TGACCAGCAG AAGCTGCGGC TTTTCTATCT GACCAACGGC
TATGCCGATT TCCGCGTCAT TTCGGCGGTC GCGGAGCTGA CGAGCAACAA GCAGGATTTC
ATCATCACCT ATGTCGTCGA GGAGGGCGAG CGCTACAAGT TCGGCAACGT CGACGTGAAG
AGCGAGCTGC GCGACTTCCA GCCTGAAATG CTGAAGAGGC TGCTGCCGAT GAAAAGCGGC
GACTGGTACG ACGCCAAGCT GGTCGAGGAT ACGGTCGAAA GCCTCAGCGA AACCGCCGGC
CTGTTCGGTT ACGCCTTTGC CGACATCAAT CCTGAGTTCC GCCGTAATCC CGACGACCGG
ACGATGGACA TCACCTTCAA CGTCGCCGAA AGCCCGCGCA CCTATGTCGA GCGCATCGAC
GTCAACGGCA ACACGCTGAC CCACGACAAG GTGGTGCGCC GCGAGTTCCG CCTCAATGAA
GGCGATGCGT TCAACAGCTT TGGCGTCAAG CGCACCGAGA ATCGCATCAA CAGCCTTGGC
TATTTCCAGG AAAATCTGGA AATCGAGCGC AAGGAAGGCA GCACGCCCGA CCGCATCATC
CTGGAAACCA ATGTCGAGGA AAAACCGACC GGCGAGCTGT CGCTGTCGGC GGGTTTCTCC
TCGATCGAGA ATTTCCTGCT CCAGGCGTCG ATCCGCCAGC GCAATTTCCG CGGCCTGGGC
CAGCAATTGC AGGCGTCGGT CAATTATTCG AGCTATTCGA AGTCGATCGA ACTGGGTTTC
ACCGAACCCT ATCTGTTCGA TCGCAACATC TCGGTCGGCG GCAGCGTCTA TCGTCGCGAC
CTCAATTCGT TCAACTTCAT CGACAACGAC CGCCGGACGA CGTTCGAGCA GGTCACGACC
GGGTTCCAGA TCAACGCCGG CGTGCCGCTT ACCGAGTTCC TCTCCTTCTT TGGCCGCTAC
AGCCTCAACT ATGATGATGT GACGCTCGAC CGGTCGATCT ACTTCTTTGG CGACCAGTGC
GATCCGCTGG TGGCAGGCCG CTATCTTTGC GATGCGATCG GCAAGCGGAC GACCTCGCTC
GTCGGCTTCA CCCTCGCCTA TGACGACCGC GACAACCGGA TTCGCCCGAC GCGCGGCCAG
TCGGCGTCGA TCAGCCAGGA TTTCGCGGGT CTGGGCGGCA GCGTCAAATA TGTCCGCACG
CGGCTTGCCG GGTCCAAGCA TTTCAACCTC GGCAGCCGCT TCATCCTCAA CCTTTCGGCC
GAAGGCGGCT ATATCCACCC CTTTGGCAGC GCGCCCACGC CGACAAGCGA CAAGGTGCGC
CTGACCGATC GCTTCTTCCT CGGCGAACCG CAGATGCGCG GCTTCGACAT TCGCGGCGTC
GGCCCGCGCG TGATCCGTTT TGCCGCGATC TATGATCCTC TGAACCCGGT GATCGACACG
AGCAACGACA ATCGCGGCCA GATCGACGAC GCGCTCGGGG GCCGCGCCTA TTATCAGGGG
CGGGTCGAGC TCGACATTCC GCTCGGCACC GGGGCGAAGG AACTGGGTCT CAGGCCGTCG
ATCTTCCTCG ACGTCGGGTC GGTGTTCAGT GTCAAGCGTC CGACGCTCAC GACGCTCGCC
GACTTCCGCG ATCCTGCCGA CGGGCTGACG AAGTTCCTGT GCCGCAATGC GACCACGGGT
GTGACGCAAT TCGCAACGAA CACGCCCGAC GCTTCGGGCG CGCCGACCGG CCAGTTCACC
ACTTGCGCGG CCGGCTTTTC GGCGCTCGCG CCGTTCGAGG AACGCTTCTT TGGCGACACC
TGGATGCCGC GCGTCGCGAT CGGCGCCGGG GTCAACTGGA ACTCCCCCTT CGGTCCCTTC
CGGATCGACT TCGCTTACGC CCTTCGCAAA GAAGAGGGCG ATGATACCAA ACGCTTCTCA
TTCAATGTAG GAACTCAATT CTGA
|
|---|
| Protein sequence | MASHKILGRT QLSVALLAGT MLSAPLMAQD VAPPTVPAPT VPAPAPEAAP TATTIQSITV
TGNQRLEAQT ILSYLRLRVG QTYDRATLDQ ALKDLAATEL FKDFQITDNN GALQIQVTEN
PVINRVILEG NKRLKEDKIR PEIKLAPRQI FTRSKVRADV ARIIELYKRQ GRFAATVEPK
MVSLDQNRVD VVFEINEGPK SKVRQINIIG NEKFSDGDLK DEMATKETGL LTILSSNTSY
DPDRLAYDQQ KLRLFYLTNG YADFRVISAV AELTSNKQDF IITYVVEEGE RYKFGNVDVK
SELRDFQPEM LKRLLPMKSG DWYDAKLVED TVESLSETAG LFGYAFADIN PEFRRNPDDR
TMDITFNVAE SPRTYVERID VNGNTLTHDK VVRREFRLNE GDAFNSFGVK RTENRINSLG
YFQENLEIER KEGSTPDRII LETNVEEKPT GELSLSAGFS SIENFLLQAS IRQRNFRGLG
QQLQASVNYS SYSKSIELGF TEPYLFDRNI SVGGSVYRRD LNSFNFIDND RRTTFEQVTT
GFQINAGVPL TEFLSFFGRY SLNYDDVTLD RSIYFFGDQC DPLVAGRYLC DAIGKRTTSL
VGFTLAYDDR DNRIRPTRGQ SASISQDFAG LGGSVKYVRT RLAGSKHFNL GSRFILNLSA
EGGYIHPFGS APTPTSDKVR LTDRFFLGEP QMRGFDIRGV GPRVIRFAAI YDPLNPVIDT
SNDNRGQIDD ALGGRAYYQG RVELDIPLGT GAKELGLRPS IFLDVGSVFS VKRPTLTTLA
DFRDPADGLT KFLCRNATTG VTQFATNTPD ASGAPTGQFT TCAAGFSALA PFEERFFGDT
WMPRVAIGAG VNWNSPFGPF RIDFAYALRK EEGDDTKRFS FNVGTQF
|
|---|
| |