| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1822 |
|---|
| Symbol | |
|---|
| ID | 4082174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1920663 |
|---|
| End bp | 1921247 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638010197 |
|---|
| Product | heme exporter protein CcmA |
|---|
| Protein accession | YP_616867 |
|---|
| Protein GI | 103487306 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
|---|
| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.99348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.178164 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGTTC TGCTGGCGCT CGACGGCGTC GCGTGCATCC GCGGCGACCG GCTGGTCTTT
GAGGAGCTGT CGCTCGCTCT GAACCGCGGC GATGCGCTCT GGGTGCGCGG GCCGAACGGC
GCGGGCAAAT CGAGCCTGAT CCGTCTCGCC GCCGGGCTGC TGCGTCCCGC CGCGGGAAGG
GTCGTGCGCC GCGGGCGGAT CGCGCTGATC GACGAGGCGG CGGCGCTCGA TTCCGAACTG
CCGCTGCGCC GCGCGCTCGA TTTCTGGGCG CGGGTCGATA CGGTCGACGG TCATGCCGTC
GACCGGGCGA TGGACATGAT GGCGCTGAAC ACCCTGGCCG ACGTGCCGGT GGCGATGCTT
TCGACGGGGC AGCGAAGGCG CGCGGCGATG GTGCGGGTGA TCGCCAGCGG CGCGCCGATC
TGGCTGCTCG ACGAACCCGC GAACGGGATG GACCAGGCCG CGACCGCGCG GCTGGTGGCG
GCGATTGCGA CGCACCGCGC GAACGGCGGC GCGGTGTTGC TGGCGTCGCA TTTCGCGCTG
GCGATTCCCG ATCTGGACGA GCTGGTTATG GGGGTGTTGG CATGA
|
|---|
| Protein sequence | MTVLLALDGV ACIRGDRLVF EELSLALNRG DALWVRGPNG AGKSSLIRLA AGLLRPAAGR
VVRRGRIALI DEAAALDSEL PLRRALDFWA RVDTVDGHAV DRAMDMMALN TLADVPVAML
STGQRRRAAM VRVIASGAPI WLLDEPANGM DQAATARLVA AIATHRANGG AVLLASHFAL
AIPDLDELVM GVLA
|
|---|
| |