| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1562 |
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| Symbol | |
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| ID | 4082676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1629898 |
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| End bp | 1632237 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638009931 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_616608 |
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| Protein GI | 103487047 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0729] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.386994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAT CTGAAAAATC CTGTGATTCT TCGTGCCGCC GACTGGCGGG AATAGGGTCG
CTGCTGGTCG GCGCCGCGGC CTTGCCGGCC CTGCTGCTTG CGCCGTCGGT GATCGCGCAG
GAACAAGAGA AGTCGGTATC CCGAACCGGC GTCGCGGCCG CGGCCGACGA TCCGATCGCA
TCGCCATCGC CGCCACCGCC CGAGGCGGAT CTGCCCGAGG TCGAACCGAT CATCGCCGAC
GACGAGTTTG AAAAGGCGAT CCCGCCGATC AGCGCCGAGG AGGATCCCGA ACTTGACCGG
CCGCTCGAAT CGATCGCCGA GGTCGAGCGG CGGCAGGCCG CCGACGCGGC GCGGCGCGGG
AATCAGGACG GGGATGAAGC CGAAACCGCC GGCGGCGCCG CAACGCCCGC GGTCGATGGC
GGTCCCGTTC CGGCCCTTGC CGACGGCGAT AGCGTCGAGG CGATTGGCGA CGCGCCGATA
AGCGACATCG AACTCGCGGC GCTGCTCCCC CCGCTCGACA ATTTCGATGT CGAACCCGTC
GAATTCGCCG AGGCGGAAGA GGAGGATGAT GGTCGCGAGC TGGCCTATCA GGTTCGGGTC
AACGGGCTGG ACGCGGCCGA CGACGGCACC AGCGTGGATC TTGCCGACAT GTTCGGCGAT
CTGTCGGCGC TTTACGATGG TGACGGCAAG GCCGACAATG CGGCGATGAT CCGCGCGCGT
CTGTCCGCCG ATGGCGAGCT GATGCAGCGC ATCCTGGCGT CGGAGGGCTA TTATGACGCG
GTCGTCGAGA CGCGCATCGA GCGCGGGCCG CGCGAGGAAG GGCAGGACCG CGGCAGCCGT
CCGATCACCG CGATCATCGA CGTGACGCCC GGACAGCGAT ACACGCTCTC CGACATCGTG
ATCGACGCCG CCCCGACGAT CCCCCCCCGC CTGATCGCCG ACAATTTCCC GCTGAGCGTC
GGTGAGCCCA TCGTCGCGCA GCGGATTCAG GGCGCCGAGG CGGCGATCGC GCTCAAGCTG
CCCGAAGAAG GCTATCCGTT CGCGCAGGTA GGCCAGCGCG ACGTCCTGCT CGACCCGGCG
ACGGGAGAAG GCGTCTACAC GCTGCCTGTC GATATCGGCA AACGATCGCG CTTTGGCGGC
ATCGAGACGA CGGGCGACCT TGCTTTCGAT GCCGATCATG TCGCGGTGCT CGCACGCTTC
AAGCGCGGCG ACCTTTACGA CAGCCGCAAG GTCGATGACC TCCGGCAGGC GCTCGTCGCT
ACCGGGCTCT TCTCGACCGT CGCCGCCGAA CCGCAGCCGA CGGGTGAAAG CGCGGGCGAC
GGCACCGAAT ATGTGACCAT GCTGGTGACA CAGCAGGCGG GGCCACCACG CACGATCGCG
GCGAGCGCGG GTTATGGCAC GGGCGAGGGG CTTCGGGTCG AGGGAAGCTG GACGCACCGC
AACATGTTCC CCCCCGAAGG CGCTCTGACC TTTCGCGGCG TCATCGGCAC GCAGGAACAG
GGGATCGGTG CGACGCTGCG GCGGTCGAAC GCCGGTCGGC GCGACCGGAC GCTGGAACTC
GTCGCCGAGG CAAAGCGCAG CAATTATGAG GCCTTCGAGG CGTTGACCGG CCGCGTCGGC
GCGCGCATCA GCTATGATTC GACGCCGATC TGGCAAAAGA AGTTCACCTA TGCCTATGGC
GTCGAGCTCA TTGCCACGCG CGAGGATGAT TATGATTTTG CGACGGGCGA GCGGTCCTTT
GACTTCTACA CCATCCTGGG GCTGAGCGGG CAGGTCGGGA TAGACCGTAC CGACAACTTG
CTCGACCCGA CCAAGGGGTT TCGCATCACG TCGCTGATTC AGCCTGAAGG CTCGCTTTCG
GGACGCTTCT CCCCCTATGC GCGGCTTCGC ACCGACATCA GCGGCTATTA TCCGATGACC
GACAGCATCG TGCTCGCGGG GCGGGTGCGC TTCGGGTCGA TCCTCGGTGC CGCGCGCGAA
CGGCTCGCGC CGTCGCGGCG CTTTTATGCG GGCGGCGGCG GGTCGGTGCG CGGCTTCGGT
TATCAGGAGC TAGGACCCAA AGACCCCAAC AATGATCCGA TCGGCGGCCG CAGCGTCAAC
GAGGTCGCGG TCGAGGCGCG CTATCGCTTC GGCGATTTCG GCGTCGTCGG CTTCGTCGAT
GCGGGGCAGG TTTACCGCAG TTCGGCGCCG ACCTTTCAGG ATCTGCGCTT CGGCGCCGGC
ATCGGCGCGC GCTATTACAC CAATTTCGGG CCGATGCGCT TCGACATCGC GACGCCGATC
GCGCGCAAGC CCGGCGAAGC GCGCGTCAGC GTCTATGTGT CGATCGGGCA GGCCTTCTGA
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| Protein sequence | MQKSEKSCDS SCRRLAGIGS LLVGAAALPA LLLAPSVIAQ EQEKSVSRTG VAAAADDPIA
SPSPPPPEAD LPEVEPIIAD DEFEKAIPPI SAEEDPELDR PLESIAEVER RQAADAARRG
NQDGDEAETA GGAATPAVDG GPVPALADGD SVEAIGDAPI SDIELAALLP PLDNFDVEPV
EFAEAEEEDD GRELAYQVRV NGLDAADDGT SVDLADMFGD LSALYDGDGK ADNAAMIRAR
LSADGELMQR ILASEGYYDA VVETRIERGP REEGQDRGSR PITAIIDVTP GQRYTLSDIV
IDAAPTIPPR LIADNFPLSV GEPIVAQRIQ GAEAAIALKL PEEGYPFAQV GQRDVLLDPA
TGEGVYTLPV DIGKRSRFGG IETTGDLAFD ADHVAVLARF KRGDLYDSRK VDDLRQALVA
TGLFSTVAAE PQPTGESAGD GTEYVTMLVT QQAGPPRTIA ASAGYGTGEG LRVEGSWTHR
NMFPPEGALT FRGVIGTQEQ GIGATLRRSN AGRRDRTLEL VAEAKRSNYE AFEALTGRVG
ARISYDSTPI WQKKFTYAYG VELIATREDD YDFATGERSF DFYTILGLSG QVGIDRTDNL
LDPTKGFRIT SLIQPEGSLS GRFSPYARLR TDISGYYPMT DSIVLAGRVR FGSILGAARE
RLAPSRRFYA GGGGSVRGFG YQELGPKDPN NDPIGGRSVN EVAVEARYRF GDFGVVGFVD
AGQVYRSSAP TFQDLRFGAG IGARYYTNFG PMRFDIATPI ARKPGEARVS VYVSIGQAF
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