| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1516 |
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| Symbol | |
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| ID | 4080029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1582264 |
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| End bp | 1584234 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638009883 |
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| Product | cytochrome c assembly protein |
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| Protein accession | YP_616562 |
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| Protein GI | 103487001 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.658808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCG AACTCGGCCT TGCCCTGCTG TGGATCGCGG CGGCGCTCGC GTGCCTGTCA
CTCGTCGCGG GAACCTTGTT CCTGCGCGGC GGACCGGGGG ATCTGGCGGC GCTGGTGCGA
CCGGCGAGCG TCGCGCAGGG TGTGCTTACC ACGGCCGCCT TTGGTCTGCT CATCGCGCTG
TTCGTGCGGT CCGACATGTC GGTCGAGCTG GTCGCGCGCA ACAGCAACAG TTTGAAGCCG
ATGATCTTCA AGATTGCCGG GACATGGGGC AATCACGAAG GGTCGATGCT GCTGTGGCTG
ATGATCCTGT CGCTGTCGGG GGCGCTGATC GCGCTTTTCG AAAAGCGGCT GCGCGAGGAT
ACGCTGATTG CGACGCTGGC GGCGCAGGCG GCGCTGAGCC TCGGCTTTTT CGCCTTTCTG
CTTTTCTCTT CCAATCCCTT CAAGCGGTTG CCGGTCGCGC CTCCCGACGG GCAGGGCCTG
AACCCGCTGC TTCAGGACAT CGGTTTGGCC TTTCACCCGC CGACGCTTTA CGTCGGCTAT
GTCGGGCTGT CGGTCGCGTT CAGCTTTGCC GTGGGCGCGC TGATCACGCG CGAGATCGGT
CCGGCCTTCG CGCGCGCGAT GCGGCCGTGG GTGCTGGGAA GCTGGATCTT CCTGACCCTG
GGCATCACCG CGGGGAGTTA CTGGGCCTAT TATGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGATCCGG TCGAGAATGT CTCGCTCGTG CCCTGGCTCG CGGGCGCGGC GCTGCTCCAT
TCGGTCGCGG TCACGGCGAC GCGTAACGCG CTGCGCGCGT GGACGGTGAT GCTCGCGGTG
ATCGGCTTTT CGATGTCGAT GGTCGGCACC TTCATCGTGC GGTCGGGTCT GCTCACGAGC
GTCCACAGCT TTGCCGTCGA TCCCGAGCGC GGCACCTTTC TGCTCGTGCT GATGGCGATC
TATATCGGCG GCGCGCTGAC CCTTTTTGCC CTGCGCGCCG GGTCGGTTGC CGAAGGAAAG
AAATTTGCGC TGCTGAGCCG CGAAGGCTCG CTCGTGATCA ACAACCTGCT GCTTACGACG
ATCCTCGCGC TCGTCCTTCT CGGCACGCTC TATCCGATCG TCGCCGAGGC GATGGGCGAG
AAGATTTCCG TCGGTCCGCC CTATTATAAC AAGGTGGCGG GGCCGCTCGC GCTGATCCTC
TGCCTCGTGA TGGTTGCCGG GCCGTTGCTC AGCTGGCGCA AGGACGACGG CAAACGGCTG
TGGTCGCGCC TGCCTGTCGC GATCTTCGCC GGGGCGGCGA TACTGTTCGC GTTGATCCTG
TTCGGCGGCA AGGTCGGTAT CCTGCCGCTG CTCGGCATGA CCGTCGCGGG CATCGTCGCG
GTCGCGAGCC TGGCGCCCTT GTGGGGCCGC AACCTCCGCC GCGTGCCTTT GCCGACCTGG
GGCATGGTCG TCGCGCATTT CGGCGTCGGT GTGTGCCTCG CCGGCATGGG AGCAGAGAGC
GCGTTCATCA AGGAAAGGCT GGTCGCCGCC GCGCCCGGCG AGACGATCCG CATCGCCGAT
TTTTCGGTGA AGTTCGTCGG CGTGAAGCCC CTGGCCGGGC CGAACTATAC TGCCATTGAG
GGCGCGCTGG TCGCGACCAC CCCATCGGGC AGCAGCTTTA CGATGAAACC CGAAGCGCGA
ACCTTTCCGG GGCTGATGGG CACGGCACCG ACCGAAACGA ACGAGGCGGC ATTGCTGACG
CGGCCGGGCG GGCAGCTTTA TGCAGTGCTC GGCCAGCCGG TGACGGGCGA GGATGGCCGC
GCCGACCGCT ACCAGATTCG CCTGTGGTGG AAACCGTTGG TGTGGTGGAT ATGGCTTGGC
GGCGGCCTGA TCGCGCTCGG CGCCACTTTG TCGCTGCTTG GACGCGCGCA GCTGCTCGCC
ATGTGGCGCG CGCGCCGGCA CCGCAAATCA CAGGAGCGTT TTGCGCCATG A
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| Protein sequence | MIAELGLALL WIAAALACLS LVAGTLFLRG GPGDLAALVR PASVAQGVLT TAAFGLLIAL
FVRSDMSVEL VARNSNSLKP MIFKIAGTWG NHEGSMLLWL MILSLSGALI ALFEKRLRED
TLIATLAAQA ALSLGFFAFL LFSSNPFKRL PVAPPDGQGL NPLLQDIGLA FHPPTLYVGY
VGLSVAFSFA VGALITREIG PAFARAMRPW VLGSWIFLTL GITAGSYWAY YELGWGGWWF
WDPVENVSLV PWLAGAALLH SVAVTATRNA LRAWTVMLAV IGFSMSMVGT FIVRSGLLTS
VHSFAVDPER GTFLLVLMAI YIGGALTLFA LRAGSVAEGK KFALLSREGS LVINNLLLTT
ILALVLLGTL YPIVAEAMGE KISVGPPYYN KVAGPLALIL CLVMVAGPLL SWRKDDGKRL
WSRLPVAIFA GAAILFALIL FGGKVGILPL LGMTVAGIVA VASLAPLWGR NLRRVPLPTW
GMVVAHFGVG VCLAGMGAES AFIKERLVAA APGETIRIAD FSVKFVGVKP LAGPNYTAIE
GALVATTPSG SSFTMKPEAR TFPGLMGTAP TETNEAALLT RPGGQLYAVL GQPVTGEDGR
ADRYQIRLWW KPLVWWIWLG GGLIALGATL SLLGRAQLLA MWRARRHRKS QERFAP
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