| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1277 |
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| Symbol | |
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| ID | 4082528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1334923 |
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| End bp | 1335921 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638009637 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_616324 |
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| Protein GI | 103486763 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family
[TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.360448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCGC TTCGGCCCAT CCAGATCGGC AACATCACCA TCGCGGATCC CGTGATCCTC
GCGCCGATGA CGGGCGTCAC CGACCTGCCG TTCCGCAAGC TCGTTCGCTA TTATGGCTCC
GGGCTCAACG TCACCGAGAT GATCGCCAGC CAGGCAGCGA TCCGCGAGAC GCGCCAGTCG
ATCCAGAAAG CGGCGTGGGA TCCGGTGGAG GAGCCCGTGT CGATGCAGCT CGTCGGCTGC
ACCCCCTATG AAATGGGCGA AGCGGCGAAG CTCAACGAGG ATCGCGGCGC GGCGATCATC
GACATCAACA TGGGCTGCCC GGTCCGCAAG GTCACCAATG GCGACGCCGG ATCGGCGCTG
ATGCGCGACC TCAGGCTCGC TGCGGCGCTG ATCGACGCCT GTGTCAAGGC GGTGTCGGTC
CCGGTAACGG TCAAGATGCG CATGGGCTGG TGCCATGACA GCCTCAATGC CCCCGAACTC
GCGCATATTG CCGAGGATCT GGGCGCAAAG CTCGTCACTG TCCACGGCCG CACGCGCAAC
CAGATGTATC GCGGCGAGGC CGACTGGGGT TTTGTGCGCA AGGTCAAGGA GGCCGTGTCG
ATTCCCGTGA TCGTCAACGG CGACATTTGC TCGGCCGACG ACGCGCGCAC CGCGCTGGCG
CAAAGCGGCG CCGATGGCGT GATGATCGGC CGCGGCGCCT ATGGCCGCCC CTGGCTGCTG
GGTCAGGTGA TGGCGGCGCT GCGCGGCGAG GGCGAGCGGC CCGACCCCGG CCTCGACGAA
CAATATGACG TCATCACTTC GCATTACCGC GCGATGATCG ACCATTATGG CGAAACCACC
GGGGTCAATA TGGCGCGCAA GCACCTCGGC TGGTATGTCA AGGGGCTGCC CGGATCGGCC
GAGTTCCGCA ACAAGGTCAA CCGGATTCCC GACAGCAAGG GCGTGCTCGA CGCGCTCGAG
GCCTTTTATG GCCCGCATCT GACCCGGGCC GCCGCGTGA
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| Protein sequence | MAPLRPIQIG NITIADPVIL APMTGVTDLP FRKLVRYYGS GLNVTEMIAS QAAIRETRQS
IQKAAWDPVE EPVSMQLVGC TPYEMGEAAK LNEDRGAAII DINMGCPVRK VTNGDAGSAL
MRDLRLAAAL IDACVKAVSV PVTVKMRMGW CHDSLNAPEL AHIAEDLGAK LVTVHGRTRN
QMYRGEADWG FVRKVKEAVS IPVIVNGDIC SADDARTALA QSGADGVMIG RGAYGRPWLL
GQVMAALRGE GERPDPGLDE QYDVITSHYR AMIDHYGETT GVNMARKHLG WYVKGLPGSA
EFRNKVNRIP DSKGVLDALE AFYGPHLTRA AA
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