| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1228 |
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| Symbol | |
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| ID | 4080452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1273585 |
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| End bp | 1276758 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638009588 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_616276 |
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| Protein GI | 103486715 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0919786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAGT CACACCTGCT TTTGGGTGCT GCTGCCTTTG CAGTAGCCAT ATCTGTCAGC
CAGCCCGTCT TGGCGCAGGA GAGTGAGGAT TCGGTTGAAG CAGCCGATGA GACAGAGAAT
CCTGAGCGCG CTATCGTTGT TACTGGCTCA CGCATCGCGC GTCCCAATCT CGAATCGAGC
GTGCCGCTGA CGGCTGTTCC TGTGGGCGAC CTTACGGACC GCGGTGACAT TCAACTCGGC
GACGCGCTCA ACGAGCTGCC TTCGCTGCGT GCCACGTTCA GCCAGGCAAA CTCTACGCGC
TTTATCGGCA CCGCCGGCAT CAACTTGCTG GACCTTCGCG GCCTCGGCAC GGAACGTACG
CTCGTTCTTG TTAATGGTCG GCGTCACGTC ACGTCTTCTC CGGGATCGTA TGACGTCGAT
ACCAACACGA TCCCGGTCGA CCTACTTGAG CGTGTTGATG TCATCACGGG GGGCAATTCC
GCAATCTATG GTTCGGATGC CGTCGCCGGC GTGGTCAACT TCATTACCAA GCGCGATTTC
GATGGGATCA AGCTTCGTGG TCAGGGAGGC GTGTCCACCT ACGGCGATCG CGGCTCATAT
TTCGTTTCGG GTATCGCGGG CAAAAACTTC ATGGATGGCC GCGCAAATGT CGCGGTGGCT
GTCGAATATG CCCGCGCAAA CCCGGTTTTT TTCGCTGATC GTAGCTATCT GGGAGCCGAG
ACCGGAGTTG GGCCGGCGGG TTTTGAAGTC GTTGAGCCGG CGTTCAGGTT GGTAAATGGC
GTTCCGACGC CGGTTCCCAA CCGAAACAAT AACGGTGTTC CCAATACGCG CTTCCTTCCG
GCGGGCTTCA CCTTCAATAC AGTGTCGCTC GGCGGCATGG TCCTCACCAG TTGCCCCGCG
GCAACCGGAA CCAATGCAGC GCGAGTCGCC GCGGTCTGCA CCGGCGAGCT TTCGCCGACC
TCGGGCGGTC GTTTCTCTTA CAATTACGCA TTCCAGCCTG ACGGTACGTT GCTTCGCAAT
GGACCGGAAA ATGGGCTGGT CGACAATCGT GGCGCGGGCG GCTCCGCGCT GTTTGGCTTG
GGTGCATCGG GTCTGGAGGA CGCGATGCTG CTTCCCGGGA TCGAGCGCAT CGCTGTCAAC
CTGCTTTCTC ATGTGGAGAT ATCGCCGGCG TTCGAGCCTT TCATTGAAGC CAAGTACGTC
AGAATCAATG CGACGCAGCA ATCGACGCAG CCGACCTTTA TCGCCAGCGC TCTCAACCCG
ATCTTCTCGA TCAACAACCC GTTTCTGACG GATCAGGCCC GCCAGACGCT GCAGACGATT
CTGGCTCCGG GCGCGACGAC CTTCCAGATG CAGCGCTTCA ATAACGATCT TGGTACGCGC
GCGGAAGACC ATCGCCGCGA AACCTACCGA ATTGTCGCCG GTGTGCGTGG CGATCTCGGC
ACCAGTTCGA ACCTGACCTA TGAAGTTGCG TTCAACTACG GTCGGACTGA GACCTATTAT
GAAACCGGCG GCAACGTCGA CGTTGCCAAG TTCAACCGCG CGACTAATGC GGTGCGCAAT
TCTGCGGGCC AGATTGTTTG CGCCGTCAAC GCGGACGCGA ACCCGGCAAA TGACGATCCT
GCCTGCGCTC CGCTGAACCC GTTTGGCTTT GGTGCGCCAT CGCAGGCGGC GAAAGACTAT
GTGCTCTACA CGTCGTCTCG CGAGCAATGG GCGGAGCAGA TCAATGCGGT TGCGTTCCTC
TCAGGCAGTA CCGAGGGGTT CTTCAGCCTT CCGGGCGGCC CGGTCGGATT CGCCATCGGC
GGCGAATATC GTCGGGAAGA CGCTTATTCA GCCTTCGACC CCTTCACGCG TTCGGGGGCA
ACTTTCCTCA ATGCGATAGC AGTCTTTGAA CCACCCTCGG TGGAAATCAA GGAAGTGTTC
GGCGAACTGC GGATTCCGAT GCTGCGCGAC GTTCCGCTGG CGCACGAACT GACGCTTGAG
GGTGCGGCCC GATATTCGGA CTATGGCGGA TCCGTCGGTG GTGTCTGGGC CTATAACTTC
GGCGGCATAT ATGCACCAAT TCCCGATATA CGTTTCCGCG CGGGCTATGC CCGGTCGGTT
CGGGCACCCA ATCTTGGCAA TCTGTTCGCC ACCCGGTCTG AAACTTTCGC CAACGGACTC
ATCGACCCGT GCAGTCAGAC GGTCATCAAC GACAATCCGA ACCGTGTCCG CAACTGTGCC
GCGGCCGGCA TTCCGACAAC GATGGTCGTC GATGGAAACA CGATACCGTG GGTGAACACC
CCGGCGTCGG GCGTTTCCGG TTTCAATCAG GGCAACCCCA ATCTGATTCC TGAGGTTGGG
AAAAGTCTGA CAATTGGTGG CGTGTTCCAG CCCAGGTTCG TGCCCGGTCT CGCGATCACA
GTTGACTATT ACCGAATCAA GGTCACCAAT GTGATCCAGG GATTAACGGG TCAGGCGATC
ATCAATCGCT GCTATGACGA TCCGGTTGGG CTGGACAATC CGTTCTGTGC TGCAGTCTTC
CGCCGCCGCG ACCCCAACCC GCTCATCGAC TTCACCTTCG ATGGGCAGGC AAATCGTGTT
CCGGCCCCTG GTCAGCCGAC GCTGAACTTC CCGGTTCTCG GCCCCGCCTT TCTCAACCAG
CCGTTCAACT TCGCGGCGCG CAAGGCGGAA GGTGTCGACT TCGACGTCTC TTATCGTCGC
ACGTTCGACA ATGGCGTCAT GCTCAACCTG CGCGGCGTCG CCACATACAA CCTTAATCGC
GAAGATTTTT CCTTCATCAC GGATCCTTCG CGTTCGACGC GTATCCACGG AACGCTGGGT
GACCCCATCT GGGCGGCCAA CTTTAACGCC AATGTGGACT TCGGCACAAT CGATGTCGGT
TACAGTGCGC GTTATGTCGG CAAACAAGCG GTCGATGCAT GGGAAGTCCA GCATTCCCAT
CAGGGGCGTC CACCGACGAA CCCTGACGCC TTCCCCTTCA GGAAGTATCC GGATCGACTG
TATCACGCGT TCCGTGTCGG TTTCGAACCG GATGACAAAT ACCGCTTCTA TTTCGGCGTG
GACAATGTGT TTGATACGCG CCCGCCGTTC GACCTGACCG GCACGGGTGC CGGAAGCGGT
ATTTTCCCTG TTCAGGGCCG CTTCTTCTAC GCGGGAATCC AGGCTTCGCT CTAA
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| Protein sequence | MTKSHLLLGA AAFAVAISVS QPVLAQESED SVEAADETEN PERAIVVTGS RIARPNLESS
VPLTAVPVGD LTDRGDIQLG DALNELPSLR ATFSQANSTR FIGTAGINLL DLRGLGTERT
LVLVNGRRHV TSSPGSYDVD TNTIPVDLLE RVDVITGGNS AIYGSDAVAG VVNFITKRDF
DGIKLRGQGG VSTYGDRGSY FVSGIAGKNF MDGRANVAVA VEYARANPVF FADRSYLGAE
TGVGPAGFEV VEPAFRLVNG VPTPVPNRNN NGVPNTRFLP AGFTFNTVSL GGMVLTSCPA
ATGTNAARVA AVCTGELSPT SGGRFSYNYA FQPDGTLLRN GPENGLVDNR GAGGSALFGL
GASGLEDAML LPGIERIAVN LLSHVEISPA FEPFIEAKYV RINATQQSTQ PTFIASALNP
IFSINNPFLT DQARQTLQTI LAPGATTFQM QRFNNDLGTR AEDHRRETYR IVAGVRGDLG
TSSNLTYEVA FNYGRTETYY ETGGNVDVAK FNRATNAVRN SAGQIVCAVN ADANPANDDP
ACAPLNPFGF GAPSQAAKDY VLYTSSREQW AEQINAVAFL SGSTEGFFSL PGGPVGFAIG
GEYRREDAYS AFDPFTRSGA TFLNAIAVFE PPSVEIKEVF GELRIPMLRD VPLAHELTLE
GAARYSDYGG SVGGVWAYNF GGIYAPIPDI RFRAGYARSV RAPNLGNLFA TRSETFANGL
IDPCSQTVIN DNPNRVRNCA AAGIPTTMVV DGNTIPWVNT PASGVSGFNQ GNPNLIPEVG
KSLTIGGVFQ PRFVPGLAIT VDYYRIKVTN VIQGLTGQAI INRCYDDPVG LDNPFCAAVF
RRRDPNPLID FTFDGQANRV PAPGQPTLNF PVLGPAFLNQ PFNFAARKAE GVDFDVSYRR
TFDNGVMLNL RGVATYNLNR EDFSFITDPS RSTRIHGTLG DPIWAANFNA NVDFGTIDVG
YSARYVGKQA VDAWEVQHSH QGRPPTNPDA FPFRKYPDRL YHAFRVGFEP DDKYRFYFGV
DNVFDTRPPF DLTGTGAGSG IFPVQGRFFY AGIQASL
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