| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1090 |
|---|
| Symbol | |
|---|
| ID | 4081565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1117927 |
|---|
| End bp | 1119258 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009451 |
|---|
| Product | putative beta-lactamase |
|---|
| Protein accession | YP_616140 |
|---|
| Protein GI | 103486579 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2367] Beta-lactamase class A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.9523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCC GCCGCATCGC CCGCTCATTC GTTGCCGTTC TGCTCACCTG CACGCCGCTC
TTCGCTGCGG CACCGGCCCT CGCGCATCAA TCGCCCGAGA TGGCGGCGGC GGCCGACACC
GCTTTTGCGC GGCGCGCCGA CCAGCTTGTC GACCTGATCG CGGGGCGCAT CGCCTTTGCC
GACTATTTCG ACGCCGGTTT CCAAAAAGCA TTGCCCGAGG CGCAGTTCCG CGCGGTCACT
GCGAACCTGA TCGCCCAATA TGGTGCGCCG GTCGCGGTGG ACGGCGCGAC GTCGTCCAAC
GGCCTGTCGG GCACCGTCCG CCTGCGCTTT GAAAAGGGCG TGGCGACCGT GCTACTCGAC
GTCGCAGCGG GGGCGGACGA AAAAGTCGTC GGGCTTCGGA TCACCGACTT CACCATGGCG
GACGACAGTT TCGACAAGGT CGCGGCCGAA CTGGCCGCGC TGCCGGGTCA CACCGGCTTT
CTCGTCGCCG AGCTCGACGG CGGCGGCATC AGAAAAATCG CAGCGGCGAA CAGCGAGCGC
CAGTTCGCAA TCGGGTCGAC CTTCAAACTC TATATATTGG ACGAACTGGC GGCGCAGGTC
GCCGCGGGCA AGCGCAGATG GTCCGACGTC GTGCCTTTGA CGCACGCCAG CTTTTCGTCG
GCGGGCACGG CCGGCTGGCC GAGGGATATG CCGGTGACGC TCCAGACGCT CGCCAACTGG
ATGATCTCGG TCAGCGATAA TGGCGCGACC GACACGCTGA TCCACCTGCT CGGCCGCGAG
GCGATCGAGG CGCGGATGAA GGCGGCGGGG CACAGCGACC CGTCGCGCAA CATCCCCTTT
CTGACCACGG TCGAGGCGTT CGCGCTCAAG GGCAATAATT TCGAGCGCGA GCGCGCGGCC
TTCGTCGGCG CGAGCGATGC CGATCAAAGA AGACTGCTCG ATGTTAACGC CGACAAGATG
GTTCTGGCCA ATGTTGACGG CGTCAGCTTT GCGGGCGGCC CGCGCTTCAT CGACAGCCTC
GAATGGTTCG CCAGCCCGTC CGATGTTGCG CGGCTGATGA TCGACCTGCG CGCCCGGCAA
TCACCGGAAG CGATGGCCGC GATGGCGATC AACAATGGCG TCGGTCCGGC CGCCGCCGCC
GAATGGTCAT GGCTTGGCTA CAAGGGCGGC TCGGAAACCG GCGTCCTGTC GATGAGCCTG
CTCGGCCAGC GCAAGGGCGA TGACAAATAT GTCGTCGTCA CGGCCAGCTG GAACAATCCC
GACGCGGCGG TCGCCACCGA AACGATGGTC GCGCTGATCA AGCGCCTGCT GGCGCTTGCC
GCCAAAGATT AG
|
|---|
| Protein sequence | MIRRRIARSF VAVLLTCTPL FAAAPALAHQ SPEMAAAADT AFARRADQLV DLIAGRIAFA
DYFDAGFQKA LPEAQFRAVT ANLIAQYGAP VAVDGATSSN GLSGTVRLRF EKGVATVLLD
VAAGADEKVV GLRITDFTMA DDSFDKVAAE LAALPGHTGF LVAELDGGGI RKIAAANSER
QFAIGSTFKL YILDELAAQV AAGKRRWSDV VPLTHASFSS AGTAGWPRDM PVTLQTLANW
MISVSDNGAT DTLIHLLGRE AIEARMKAAG HSDPSRNIPF LTTVEAFALK GNNFERERAA
FVGASDADQR RLLDVNADKM VLANVDGVSF AGGPRFIDSL EWFASPSDVA RLMIDLRARQ
SPEAMAAMAI NNGVGPAAAA EWSWLGYKGG SETGVLSMSL LGQRKGDDKY VVVTASWNNP
DAAVATETMV ALIKRLLALA AKD
|
|---|
| |