Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1058 |
Symbol | |
ID | 4080784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1090825 |
End bp | 1091682 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638009419 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_616108 |
Protein GI | 103486547 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.042394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACCC GCCGTCCGCC CCGCTCCGCC CCGCGCCCCG GCGCCGACCG CTCTGCCGCA GCGGCCCCGC GCGGCCGCCG CGCCGCGCGT GCCGACGCGC CGCCGCGCAA GCTTCCCGCC GACACTGAAC GCGAGGACGG GCCGCAGCGC ATCGCCAAGC TGCTCGCGCG CGCCGGGGTC GGCTCGCGCC GCGATGTCGA GCGGATGATC GAGGAAGGCC GGATCGCGCT CAACGGCGAA GTCGTCACCC AGCCCGCGCC GCTCCTCGCG TCGCTTGAAG GGCTGACGGT CGACGGCAAT CCGGTCGCCA AACCGGTTTC GACGCGCCTC TATCGCTTCC ACAAGCCGGC GGGCTGCCTC ACGGCGGCGC GCGACCCCAA GGGCCGCAAG ACGATCTATG ACGTGCTGCC CAAGGGATTG CCGCGGCTGA TGCCGGTCGG CCGGCTCGAC TATAATACCG AGGGGTTGCT GCTGCTCACC AACGACGGCG CGTTCAAGCG TCAACTCGAA CTGCCCGCGA GCGGGGTCGA GCGCACCTAC CGCGCCCGTG CCTTTGGCGA CATCAGCCAG GCGCAGCTCG AGGAGCTGGT GATGGGGATC GAGATCGACG GGATTCGCTA TGGGAAAATC GACGCCAATC TCGAACGCCG CACCGGGCGC AACCAGTGGA TCGAAATGAC GCTGACCGAA GGCAAGAACC GCGAAGTGCG CCGCGTGCTC GAACATCTGG GGTTGCAGGT CAGCCGCCTG ATCCGCACCC GCTATGGCGA GTTTACCCTC GCCGGACTCG ACATGGGCGC GGTCGAGGTC GTGCCGCGCG ACGAATTGTT CAAGTTCCGG CGGCAACTGG CCAAATGA
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Protein sequence | MTTRRPPRSA PRPGADRSAA AAPRGRRAAR ADAPPRKLPA DTEREDGPQR IAKLLARAGV GSRRDVERMI EEGRIALNGE VVTQPAPLLA SLEGLTVDGN PVAKPVSTRL YRFHKPAGCL TAARDPKGRK TIYDVLPKGL PRLMPVGRLD YNTEGLLLLT NDGAFKRQLE LPASGVERTY RARAFGDISQ AQLEELVMGI EIDGIRYGKI DANLERRTGR NQWIEMTLTE GKNREVRRVL EHLGLQVSRL IRTRYGEFTL AGLDMGAVEV VPRDELFKFR RQLAK
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