Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1004 |
Symbol | |
ID | 4081692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1026974 |
End bp | 1028830 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638009364 |
Product | TonB-dependent receptor |
Protein accession | YP_616054 |
Protein GI | 103486493 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0684927 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGAT ATTCGACCAT TTCCATGATC GCCCTTGCCG TTGCGACCCC TGTCGTTGCG CAGGAAACCA ACCCCGATGC CGACGACATC GTCGTTACCG CATCGGGCAT CGAACAGCCC GGCGACGAGG TCGGTCAGGC GATCACGGTG ATCGACGCCG ACACGATCGA AACGCGGCAA ACGATCGACG TCGTCGACCT GCTCGCAACG ACGCCCGGCA TCCGATTCAA TCGCACCGGC ACCACCGGAT CGGTCACCGG CGTGTCGATC CGCGGCGCCG AGACGACGCA GACCCTGGTG CTGATCGACG GGGTCAAGGT CAACGACCCC AGCGGCATCG GCGACGGTTA TGATTTCGGC CATCTGCTCA CCGGCAATAT CCGCCGCATC GAGGTGCTGC GCGGATCAAA CTCGGTCGTC CATGGCAGCC AGGCGATCGG CGGCGTGGTC AATGTGATGA CGGCGACGCC CGGCTCGGGT TTCGCAGGCG GCGCATCGGC CGAATATGGC TATAGCGACA CCGTCAACGC CAGGGCCGAC CTGTCGGGCA CCACCGGGCC GGTGTCGGGC AGCATCGGTG GCGCCTATTT CCGCACCGAC GGCATTTCGT CGGCGGCGGT CGGCACCGAG CGCGACGGAT ATGAAAATAT CGCCGCCAAT GCGCGGCTGA AGGTCGCGTT CAGCGACGCG CTGAGCCTTG ATCTGCGCGG CTATTACATC AACGCCGACC TCGATTTCGA CAGCTTCTTC GGCGCTCCGG CCGACAGCGC CGACGTCGCC AGGCTCGACC AATATGTCGG CTATGCCGGG CTGAACCTCG GCCTCTTCGA CGGTCGCTTC ACCAGTCGCG CCGCGGTGAC ATGGATGCGC AACGAGCGCG ACTATTTCTT CGTGCGCGGC ACCGCCCCCG ACTTTGGCTA TAAGGGCACG AACCTGCGCT TCGAATATCA GGGCGTCGTG GCCCCCGCCG ACACCGCCAG GCTGGTGTTC GGTTACGAGC ATGAGCGCCC CGAATATGAC TTCTTCGGCT TTGGTTCGAC CGACAGCCAG AAGGCCAATA TCGACAGCGT CTATGCACTC GCCATCGTCC AGCCGCTCGC CGGCCTGTCG CTGACCGGCG GCGTTCGCCA CGACGACCAT AACCAGTTCG GCGGCGCCAC GACCTTTGGC GCCAACGCCA ATTATTCGCC CAACGGCGGC GCCACCAATG TCCGCTTGAG CTATGGCGAG GGGTTCAAGG CGCCGTCGCT CTTTCAGCTC TACGACAGCT TCAGCGGCAA TGCGGCGCTG CGTCCCGAAC GCTCGAAAAG CTATGACGTC GGCATCGACC AGAGCCTCGC CGACGGGCGC GCGCTGGTGT CGCTCACCGC CTTCCTGCGC AACACGACCG ACCAGATCAA TTTCGACAAT GCGACCTTCA CCTATGGCAA TATCGACCGC ACGCGCGCCA AGGGGATCGA GGCGACGCTG GCGCTGAAAC CCGTCGACGC ACTGAACGTC ACGGCGTCGT ACAGCTATAT CGACGCGCGC GACCGGTCGG GGCGGCCCGC GTTCGACGGC AAGCGCCTGC CGCGCCGCGC CGCGCATGCG GTCAGCCTGT CGGCGGACCA TGACTGGTCG TTCGGGCTGT CGGCCGGCGC GACGGTCACG ATGGTCGGCG ACAGTTTCGA CAATGCGACG AATATGGTGC GGCTCGACGG CTATGCGCTC GCCGGGGTGC GCGCGTCGTT CGCGGTTACC GAGCGGATCG AAGTGTACGG CCGCGTCGAT AATCTGTTCG ACGCCGATTA TGCGACGGCG TTCAACTTTG GCACCTATGG CCGCGCCGCC CATGGCGGGG TGCGGGCGCG ATTCTGA
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Protein sequence | MFRYSTISMI ALAVATPVVA QETNPDADDI VVTASGIEQP GDEVGQAITV IDADTIETRQ TIDVVDLLAT TPGIRFNRTG TTGSVTGVSI RGAETTQTLV LIDGVKVNDP SGIGDGYDFG HLLTGNIRRI EVLRGSNSVV HGSQAIGGVV NVMTATPGSG FAGGASAEYG YSDTVNARAD LSGTTGPVSG SIGGAYFRTD GISSAAVGTE RDGYENIAAN ARLKVAFSDA LSLDLRGYYI NADLDFDSFF GAPADSADVA RLDQYVGYAG LNLGLFDGRF TSRAAVTWMR NERDYFFVRG TAPDFGYKGT NLRFEYQGVV APADTARLVF GYEHERPEYD FFGFGSTDSQ KANIDSVYAL AIVQPLAGLS LTGGVRHDDH NQFGGATTFG ANANYSPNGG ATNVRLSYGE GFKAPSLFQL YDSFSGNAAL RPERSKSYDV GIDQSLADGR ALVSLTAFLR NTTDQINFDN ATFTYGNIDR TRAKGIEATL ALKPVDALNV TASYSYIDAR DRSGRPAFDG KRLPRRAAHA VSLSADHDWS FGLSAGATVT MVGDSFDNAT NMVRLDGYAL AGVRASFAVT ERIEVYGRVD NLFDADYATA FNFGTYGRAA HGGVRARF
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