| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0847 |
|---|
| Symbol | |
|---|
| ID | 4079983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 854753 |
|---|
| End bp | 855964 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638009208 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_615898 |
|---|
| Protein GI | 103486337 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.237314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.433067 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAC TTACGGCGGT GGCGGTCAAG GCCGCTTTGG CGAATCCGGG CACCTATCAG
GACGGTGACG GACTTTTCCT GAAAGTTGGA AAAACTGGTG CGGCTTCCTG GCTTTTGCGA
CTCCAGCGCG ATGGCAAACG ACAGGATATT GGTCTGGGTA GTGCGAAGCT GGTGACGCTG
GCGGAAGCGC GTGCGAAGGC TGCTGAACTC CGCAAGGCTG TAAAGGTCGA GAAACGCGAC
GTACTGACGG AGCGGAAGGA CGAGGAAGCC GCCAAGGTCA CTTTCCGCGA AGCCGCTACC
CAATATCATT CCGAGAACGA AGCTGGCTGG AAAAGCGATG TCTATGGTCG GCAATGGCTG
GCCAGTCTGG AAAACTACGC CTTCCCGAAG CTTGGCGACA TGACGACTGG TGGAATCACT
GCCGCCGATA TCATCTCGGT CCTCACGCCG ATCTGGCAGG AAATCCCCGA AACAGCCCGC
CAGGTTCGGA ATCGGATTTG CGCGGTGCTA GATTACTCCC ATGCAAAGGG TTGGCGCTCT
TCCGAAGCTC CATCAGGCAA TAGCAGCCTC AAGGCAGGGC GAGGGCTGCC GCGACAGATC
AAGAAACCGG CAAACCGCAA GGCGATGCCA TACGTGGCCG TTCCTCCGTT CCTGACCGCG
TTGCGCCGCA AACCATCCTA TTCGCGTCTG GCGCTAGACC TTCTCATTCT GACGGGCGTT
CGCTCGCAGG AAGTGCGGCT CGCGAAATGG GACGAATTCG ATCTGGACCA GCGCCTTTGG
ACAATCCCAG CCGAACACAT GAAGCGCAGC AGGGCGCACA TCGTGCCGCT TTCAGAAGCG
GCCTTGGCGG TGCTTGTGAA GGCGGACGCA ATGCGGCTTG AGGGAGCCGA AGTGGTATTC
CCCGGCATGA CGGGAAAGGC GATGTCCAAC ATGACGCTGC TCAAGGTCAT GCGCGACATG
CAGGAGCCGT TCCACGTCCA CGGTTTCCGC TCCAGCTTCA CCGACTGGGC GGCGAACGAA
GGCTTCCCCA ATGCGGTCGT CGAAGCGGCA CTGGCGCACA AGACGCCTGA CGCTGTACAG
GCCGCCTATC GCCGCACCAC ATACCTTGGC ACGCCGGATA ATCCCGGTGC GCGCGTGAAG
CTGATGGAAG CGTGGGGGAA TTATTGCGCG GGTACTGCCG GAGCAAATAC GCCGATCAAT
GAAGGCGGCT AA
|
|---|
| Protein sequence | MGKLTAVAVK AALANPGTYQ DGDGLFLKVG KTGAASWLLR LQRDGKRQDI GLGSAKLVTL
AEARAKAAEL RKAVKVEKRD VLTERKDEEA AKVTFREAAT QYHSENEAGW KSDVYGRQWL
ASLENYAFPK LGDMTTGGIT AADIISVLTP IWQEIPETAR QVRNRICAVL DYSHAKGWRS
SEAPSGNSSL KAGRGLPRQI KKPANRKAMP YVAVPPFLTA LRRKPSYSRL ALDLLILTGV
RSQEVRLAKW DEFDLDQRLW TIPAEHMKRS RAHIVPLSEA ALAVLVKADA MRLEGAEVVF
PGMTGKAMSN MTLLKVMRDM QEPFHVHGFR SSFTDWAANE GFPNAVVEAA LAHKTPDAVQ
AAYRRTTYLG TPDNPGARVK LMEAWGNYCA GTAGANTPIN EGG
|
|---|
| |