| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0327 |
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| Symbol | |
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| ID | 6331602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 335047 |
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| End bp | 336819 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 642656612 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_001930526 |
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| Protein GI | 188996275 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAACT TACACGACAG GGATGATGTA AGAACTCTTA TTAACCTTGC CAGAGAGAAA
GGATACGTAA CCTATGCAGA AATAAGCACG TATGTTGAAG AAGAGTTTTT CTCATCTGAC
GAGAATATAG AAAGCCTTAT TGAATACTTA AACGAGCTAA ACATTGATGT TAGAGACGAT
GAAAAAATCA AATCAGAAGA TGAAGATATT TCAGAACACT TAGGAATTGA CTTAAGCGAT
GACGATGTTT GGAATAAAGC TGATGACCCT GTTAAGCTTT ATCTCAGAGA AATGGGTAAA
ATTCCACTTT TAAAGAGAGA CGAAGAAATC AAATACTCAA TGGAAATAGA AAGAGGCAGA
AAAAAGGTAT TTAGAGGACT TTTAAGAACA TCTTTCTTAA CAGAAAGACT TTTAGATGAA
TGGGCAAAAG TAATAGATGG AAAAGCAAGA GTTCATGATA TCCTAAATTT AGATGAGCCA
GAAGTTAAGG ATGAAGAAGA AACTTCAGAA TCTGAAGAGT TTAGTTTGGA AAATAATGGT
AATTACGATA AAATTACAGC AGATTTTATC AAAAAAGGTC TTGAACTTGC AAAACTATAC
AGAGATCTTA TAGAAAAAGA AAAAAAATAT TTAGAGACAG GAAGCTTAGA GGACAAAAAA
GAGTTTGTAT GGCAGCATGC TAAATTAAAT AGATTTATCA AAAGCTTAAA TATTAAATTC
ACAAAATTAG ATAAAATAGC AGATGAATTA AAAGAGCTTT ATACAAAACT AAGGAAGAAT
GAAAAAGATT ATGAAAAAAG AATAAAAATC ATCTCTAAAA TTCATCCTGA CATAGATTTA
ATGCTTTCAT CAGATTATGA AAAAAATCCA GAAATACTTA AAAAGCTTGA AGAACATGGC
TTTTCTTATG GAAGATATGA AATTCTAAGA ACAGAAACAT TAAAATTGAA AGACGAAATA
GAAGAGATAA AACAAAAAAT CGGAACAATT CCATCAGAAT TTGACCATGT TTTAGACTTA
ATTCAGTTAG GTAGAAATGA AATCAATAAT GTAAAACAAG TGTTAGTTAA AGCAAACCTT
AGACTTGTTG TATCAATAGC CAAAAAATAC ACAAACAGAG GGCTACAATT CTTAGACTTA
ATCCAAGAAG GAAATATAGG ACTTATGAAA GCTGTTGATA AATATGATTA CAAGAAAGGA
TTTAAATTTT CAACTTATGC TACATGGTGG ATTAGGCAAG CAATAACAAG AGCTATAGCA
GACCAAGCAA GGACAATAAG AATTCCTGTT CACATGATAG AAACTATCAA TAAACTTTTA
AGAATATCAA GAACGCTTGT ACAAGAGCTT GGTAGAGAAC CAACTCCAGA AGAGATTGCC
AAAAAAGCCG GAATGCCAGC TGATAAAGTA AGAAAAATAC TTAGAACGTC CCAAGATCCG
GTATCTCTTG AAACTCCAAT CGGTTCAGAT GAAGAATCTC ATCTTGGAGA CTTTATAGAA
GACAAAACTG TTCTCTCTCC AGAGCAACAC ATGCTAAAAC AAGCTCTAAG ATTACAGTTG
GATGAGGTTT TATCAACTTT ATCAGAAAGA GAAGAGCAAG TTTTAAGATA TAGATTTGGT
TTAGAAGATG ATACAGAGCA TACATTAGAG CAAGTTGGAA AAAGATTTGG TGTAACAAGA
GAAAGAATTA GACAGATAGA AGCAAAAGCA TTAAGAAAGC TCAGACATCC ACACAGAGCA
AAATATTTAA AACCATTTAT TGAAGGTGAA TAA
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| Protein sequence | MINLHDRDDV RTLINLAREK GYVTYAEIST YVEEEFFSSD ENIESLIEYL NELNIDVRDD
EKIKSEDEDI SEHLGIDLSD DDVWNKADDP VKLYLREMGK IPLLKRDEEI KYSMEIERGR
KKVFRGLLRT SFLTERLLDE WAKVIDGKAR VHDILNLDEP EVKDEEETSE SEEFSLENNG
NYDKITADFI KKGLELAKLY RDLIEKEKKY LETGSLEDKK EFVWQHAKLN RFIKSLNIKF
TKLDKIADEL KELYTKLRKN EKDYEKRIKI ISKIHPDIDL MLSSDYEKNP EILKKLEEHG
FSYGRYEILR TETLKLKDEI EEIKQKIGTI PSEFDHVLDL IQLGRNEINN VKQVLVKANL
RLVVSIAKKY TNRGLQFLDL IQEGNIGLMK AVDKYDYKKG FKFSTYATWW IRQAITRAIA
DQARTIRIPV HMIETINKLL RISRTLVQEL GREPTPEEIA KKAGMPADKV RKILRTSQDP
VSLETPIGSD EESHLGDFIE DKTVLSPEQH MLKQALRLQL DEVLSTLSER EEQVLRYRFG
LEDDTEHTLE QVGKRFGVTR ERIRQIEAKA LRKLRHPHRA KYLKPFIEGE
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