Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0129 |
Symbol | |
ID | 1172552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | + |
Start bp | 113440 |
End bp | 114279 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637346571 |
Product | IS3 family transposase |
Protein accession | NP_720448 |
Protein GI | 24376340 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.384021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGACAGT TGTGTCAGCT GTTTGATGTT CATCCGAGCG GGTATTACGC GTGGAGGAGC TGCGCAAAGT CGAAGCGACA ATGTGACAAT GAACGACTTA TAGGCCAACT CAAACAATGT TGGCTTGAGT CTGGTGGTGT CTATGGATAC CGCAAACTCC ATCGAGATCT GCGTGATCTT GGCGAGCAAT GCGGTATTAA TCGTGTACAT CGCCTGATGC AGCGAGCAGG ACAGCGAGCA CAAGTTGGCT ATCGCAAGCC TAGAACTCGT AGTGGTGAGC AGCATGTTGT AACGCAAAAT CGCTTAGAAC GGCAATTCAA CCCCTTAGCG CCGAACAAAG CGTGGGTGAC GGATATTACG TACATCAAAA CGCATGAAGG TTGGCTCTAT CTTGGTGCTG TAATGGACTT GTTCTCACGT CGAATTATTG GTTGGTCAAT GGGCAGTCGT ATCACCAAAG AGCTTGCGTT AGATGCTTTA TTAATGGCGG TATGGAGTCG TAAACCTGCT GGCAAAGTGT TGGTTCATTC AGCTCAAGGA AGCCAATACA CGAGCCATGA TTGGAGTGAG TTTCTAAGCG CTCATGGTTT GGAAGGTAGC ATGAGCCGTC GAGGAAACTG CCACGATAAC GCAGTAGCAG AGAGTTTCTT TCAACTGCTG AAACGTGAAC GAATTAAGCG AAAAATCTAT GCGACCAGGG ACGACGCAAA GATGGATGTG TTTAATTATA TTGAGATGTT TTACAACCCG AAACGACAGC ATAGTTCCAA TGATGGACTA TCACCGTTAG AGTATGAACG TCAGTATTTT AATGAGGTTA AAAGTCGTCT AGTGAAGTAG
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Protein sequence | MRQLCQLFDV HPSGYYAWRS CAKSKRQCDN ERLIGQLKQC WLESGGVYGY RKLHRDLRDL GEQCGINRVH RLMQRAGQRA QVGYRKPRTR SGEQHVVTQN RLERQFNPLA PNKAWVTDIT YIKTHEGWLY LGAVMDLFSR RIIGWSMGSR ITKELALDAL LMAVWSRKPA GKVLVHSAQG SQYTSHDWSE FLSAHGLEGS MSRRGNCHDN AVAESFFQLL KRERIKRKIY ATRDDAKMDV FNYIEMFYNP KRQHSSNDGL SPLEYERQYF NEVKSRLVK
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