Gene SO_4579 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4579 
Symbol 
ID1172164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4773582 
End bp4774142 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content45% 
IMG OID637346290 
Productfimbrial protein, putative 
Protein accessionNP_720095 
Protein GI24376052 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATCTG TAATTAAGTT TGTCCTTGTT ATTGTTGTGG TGTTACTTGC TAGTATTACC 
CATGCCGCAG ATGGCACCAT TAAATTCGAC GGGCATCTAG TAGATCAAAC TTGCACAGTT 
TCAGTGGATG GTGTGGTAAG TCCAGCTGTT GCCACTGTGA CACTGCCAAC CATTTCCGCA 
GGCTTATTGA ATGCCCCGGG TAAGGTGGCT GGTAGAACTG ATTTTGAAAT TACCCTCAGT 
AATTGCCAAG GTTTGGCCAA TGGTGCGAAA GCTTTTTTTG AAGGGGGAGC CGATGTAGAG 
CCCATCTCTG GGCAACTAAT CAACCGCGGT GATGCAACTA ATGTGCGTTT GCAATTATTG 
GATAATGTCG ACGGAGTTGG CGCACCAATC AAAGTGGGTG ATGGTTTTGA ACAGTTGATT 
TTTAGTGGAA ACGTGTATAT CAGTAATGGT GATGGTACGG GAGCGGGAGT GCTTCCATAC 
GCGGTTCAAT ACATTGCAAC GGGTATTGCA ACCGCGGGCT CAATACAAAG TACAGTGACT 
TATTCTATCC AATATTTATA A
 
Protein sequence
MTSVIKFVLV IVVVLLASIT HAADGTIKFD GHLVDQTCTV SVDGVVSPAV ATVTLPTISA 
GLLNAPGKVA GRTDFEITLS NCQGLANGAK AFFEGGADVE PISGQLINRG DATNVRLQLL 
DNVDGVGAPI KVGDGFEQLI FSGNVYISNG DGTGAGVLPY AVQYIATGIA TAGSIQSTVT 
YSIQYL