Gene SO_3524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3524 
SymbolpilE 
ID1171197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3677770 
End bp3678162 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content40% 
IMG OID637345325 
Producttype IV pilus biogenesis protein PilE 
Protein accessionNP_719071 
Protein GI24375028 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATTA AAGATAAAGG TTTTACCTTA ATTGAAGTGA TGATAGTTGT TGTCATTATT 
GGAATTTTAT CGGCAATAGC CTATCCCTCT TATACTCGTT ATGTGGCTCA GAGCACGAGG 
GCTGAGGGGT TGTCCGCGTT AATGAAATTG GCCAATCTAC AAGAGCAGTA TTATTTAGAC 
AATCGAAAAT ATGCTACTGA TTTGACTAAA ATTATAAATG CAGATCCATA TATTACCGAA 
AACGGTAATT ACTCAGTGAC ATCAAGTGGT ACTTCATCAT TTACACTAAA AGCGGTCGCA 
AAAGGGGTAC AGGCAAGCCG AGATTCTTCT TGTTCTCCTT TGACCATCAC TGATACAGGG 
GCTAAAGGCC CGAGTGCGGA GTGTTGGAAA TGA
 
Protein sequence
MKIKDKGFTL IEVMIVVVII GILSAIAYPS YTRYVAQSTR AEGLSALMKL ANLQEQYYLD 
NRKYATDLTK IINADPYITE NGNYSVTSSG TSSFTLKAVA KGVQASRDSS CSPLTITDTG 
AKGPSAECWK