Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3509 |
Symbol | hex |
ID | 1171183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3659904 |
End bp | 3662594 |
Gene Length | 2691 bp |
Protein Length | 896 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637345311 |
Product | beta-hexosaminidase b precursor |
Protein accession | NP_719056 |
Protein GI | 24375013 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAA CGATTGCCGC CACCGCCATT TTATTTGCAT TAGGCTTAAG TGCCTGTAGC CAAGGGCCTA AAACTGTAAA TACGCCAGCG CCAAGCTCTG CTGAGCAACC CACGCCAGCG CTATTAACCC AAGCGCAATT GCAGCAGTTT GGGGATAATT TAGGCGTTAC CTACCGGGTT CTCACTAATC GACCTGACGA TAACTGTGAT AAGGCCGCCG CTGAGGGGCG CTGCTTTGTG GCTGAAATTG ATTTTGTTCC TGAAGTCGAT CTCATTGGCA AGGAATGGGC GATTTATTTT AGCCAGATGC GCCCGGTTCA ATCTGTTGAG GGTAAAGAGT TTTCTATCAC TCATATCAAG GGCGATCTCT ATCGCATCGC GCCTACCGAG GCATTCAGCG GTTTTAGCAA AGGGGTTAAA AAGACCTTAA GGTTCCGTGG TGAGCTTTGG CAACTGTCAG AAACCGATGC CATGCCAAAC TATTACATTG TTGCTGGGGA TTTATCGCCA GTGGTGATTG CCAGCACTCA AGTGAAGCAA GATCCTGAGA CTCGAATGGA AGTGCGTCCC TATGTCGAGC CGTTCACCGA TATGGTGAAA CAGTATAGCC GCACTGATGC GGATAAATTG GCGCCTGCGA CCGCATCACA GCTATTTAGC AATAACCAAA ATGTCAGTGA AGATGCCAGT TTAGCGGTGA ATACGATTAT TCCAACGCCA AAAACGGTGG TGCTCCACAG CAATGATAAA GTGGTATCAC TCTCCTCTGG CATTAAATTG GATGTCGCGT CAGTGTCCAG TCCATCCGCT GAAAAACAGT CTTTTAAAAC CGACCAAGTT GCAGCTGCGC TTGAACGCTT AGCACGTTTG GGCGTTAAAG AGTCAGAACA AGGCTTAGTG ATGAAACTGA GCTGGCGCCA AGGCGCTGAG GGCAGTTATC TGCTGGATAT TAAACCTGAT GGTATCAAGA TTGCCGCAGG TGATGCGGCA GGATTTTCCT ATGCGTTATC ATCGCTTACC AGTTTAATCG ATGTGCAGGA TTTGCGCGTA AATGCGATGA CAATTGAAGA TAGCCCAAGA TATCCATTCC GCGGTATGCA TATCGATGTG GCACGTAATT TCCACAGTAA GGCGATGATT TTTGCACTGA TTGATCAAAT GGCGGCTTAC AAACTCAACA AATTACATCT GCATATGGCC GATGATGAAG GTTGGCGCTT AGAGATTGAT GGCCTGCCTG AGCTGACCGA CATTGGTAGT AAGCGTTGTC ACGATCTTGA GGAGAATACT TGCTTGTTAC CGCAGCTTGG TAGTGGTCCT TTTGCCGAGT CGAGTGTTAA TGGTTTCTAT AGTAAACAAG ACTACATCGA TATTCTCAAA TACGCCAATG CGCGCCAAAT TCAAGTGATC CCTTCGATGG ATATGCCTGG TCATAGCCGC GCGGCGATAA AATCCATGGA GGCGCGTTAC CGTAAATTAC TCGCCCAAGG CAAGCCTACG GAGGCGAAAA CCTATTTATT GTCGGATGCG GCTGATACGA CTGTGTATTC TTCAGTGCAG TATTACAACG ACAACACCCT GAACGTCTGT ATGGAATCGA CCTATCAGTT TGTTGATAAA GTGATTGATG AAATTGCCAA ATTACACCAA GCCGCGGGGC AACCATTAAC TCGATACCAT ATCGGCGCCG ACGAAACCGC AGGAGCGTGG AAGCAATCTC CTGAGTGTTT ATCCTTTGTG GCCAATAACG ATAAAGGAGT GAAATCCATC GAGGATTTAG GCGCTTACTT TATTGAGCGG ATATCGAATC AACTGGCAGA AAAAGGCATT GAAGCCGCAG GTTGGAGTGA TGGCATGAGC CATGTTCGCC CAAGCTATAT GCCAGCTAAA GTCCAATCCA ATATTTGGGA TGTAATTGCC TACAAAGGAT ATGAGCATGC AAACCAGCAA GTGAACAACG GTTGGGATGT AGTACTCTCG AATCCTGAAG TGCTTTATTT TGATTTTCCC TACGAAGCCG ATCCTAAAGA GCATGGCTAT TATTGGGCCA GCCGCGCCAC CAACGCGCAC AAAGTGTTTA GCTTTATGCC GGATAACTTA GTGGCGAATG CGGAGCAGTG GACCGACTTG CAAAATCTGC CTTTCGAGGC CGACGATAGG GCAAGAACCG ACGAGAAAGG CAAAAAATCT GGACCACGGG AGCAAGGTAA AAACTTTGCT GGTTTACAGG GGCAGTTGTG GAGTGAAACC ATTCGCAGCA ACGATACCGT GGAGTACATG ATTTTCCCTC GTTTATTGAT GCTGGCTGAG CGAGCTTGGC ATCAAGCAGA GTGGGAAGTG CCTTACCAAT ATCAAGGTGC ATTGTACAAC CAAAGCACCG GGCACTTTAC TGCGGCAATG CGTGACGCAC AGGCGCAATC TTGGCAACAA ATGGCCAATA CCTTAGGGCA TAAAGAGTTT ATCAAACTCG ATAAGGCCGG TATTGATTAT CGTGTTCCTA CGGTTGGCGC CAAGATCCAA GGCGGCAAAC TGTTCGCTAA TGTGGCGTAT CCAGGGCTTA AGATGGAGTT CCGCCAAGCA AATGGCCAAT GGCAAGCTTA TCAAGCTGGG CAGGCCGTGA CTGCGCCCGT TGAGATCCGT GCTATTGCTG CTGATGGTAT CCGCAAAGGC AGAAGCTTAA TCGTTAATTA A
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Protein sequence | MSKTIAATAI LFALGLSACS QGPKTVNTPA PSSAEQPTPA LLTQAQLQQF GDNLGVTYRV LTNRPDDNCD KAAAEGRCFV AEIDFVPEVD LIGKEWAIYF SQMRPVQSVE GKEFSITHIK GDLYRIAPTE AFSGFSKGVK KTLRFRGELW QLSETDAMPN YYIVAGDLSP VVIASTQVKQ DPETRMEVRP YVEPFTDMVK QYSRTDADKL APATASQLFS NNQNVSEDAS LAVNTIIPTP KTVVLHSNDK VVSLSSGIKL DVASVSSPSA EKQSFKTDQV AAALERLARL GVKESEQGLV MKLSWRQGAE GSYLLDIKPD GIKIAAGDAA GFSYALSSLT SLIDVQDLRV NAMTIEDSPR YPFRGMHIDV ARNFHSKAMI FALIDQMAAY KLNKLHLHMA DDEGWRLEID GLPELTDIGS KRCHDLEENT CLLPQLGSGP FAESSVNGFY SKQDYIDILK YANARQIQVI PSMDMPGHSR AAIKSMEARY RKLLAQGKPT EAKTYLLSDA ADTTVYSSVQ YYNDNTLNVC MESTYQFVDK VIDEIAKLHQ AAGQPLTRYH IGADETAGAW KQSPECLSFV ANNDKGVKSI EDLGAYFIER ISNQLAEKGI EAAGWSDGMS HVRPSYMPAK VQSNIWDVIA YKGYEHANQQ VNNGWDVVLS NPEVLYFDFP YEADPKEHGY YWASRATNAH KVFSFMPDNL VANAEQWTDL QNLPFEADDR ARTDEKGKKS GPREQGKNFA GLQGQLWSET IRSNDTVEYM IFPRLLMLAE RAWHQAEWEV PYQYQGALYN QSTGHFTAAM RDAQAQSWQQ MANTLGHKEF IKLDKAGIDY RVPTVGAKIQ GGKLFANVAY PGLKMEFRQA NGQWQAYQAG QAVTAPVEIR AIAADGIRKG RSLIVN
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