| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3136 |
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| Symbol | dctM |
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| ID | 1170824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3264761 |
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| End bp | 3266158 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637344951 |
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| Product | C4-dicarboxylate transport protein |
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| Protein accession | NP_718696 |
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| Protein GI | 24374653 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATTG CAACACTATT TTGCGTCTTA TTCATTTGCA TGTTTTTAGG TATGCCCATC
GCGATAGCAT TAGGCTTTTC CAGCATGCTG ACCATTTTAT TTTTCTCCAA TGATTCACTT
GCTTCTGTGG CATTAAAACT TTATGAGTCA TCGTCTGAGC ATTATACGCT GCTGGCGATC
CCCTTCTTTA TTTTGTCATC GGCCTTTTTA TCTACCGGCG GCGTAGCCAG ACGGATCATC
GATTTTGCGA TGGATTGCGT TGGCCATATT CGTGGTGGCT TAGCCATGGC ATCGGTAATG
GCCTGTATGC TCTTTGCCGC CGTGTCAGGT TCTTCCCCCG CGACCGTCGC TGCCATTGGT
TCTATCGTGA TTGTCGGCAT GGTAAAAGCT GGTTACCCCG AAAAATTTGC CTCTGGCGTG
ATCACAACCT CCGGCACCCT CGGTATTCTA ATCCCCCCCT CGATTGTGAT GCTGGTTTAT
GCCGCAGCCA CCGAGGTTTC AGTTGCTAAA ATATTTATGG CGGGTTTAGT TCCCGGTTTA
CTGCTGGGAT TTTTAATCAT GGTCGTGATC TACATTGTCG CGAGAATTAA AAATCTCCCC
TCTATCCCCT TCCCAGGCTT TAAAAAATTA GGGGTATCCA GTGCCAAAGC CATTGGCGGT
TTAGCACTCA TTTTCATCGT CTTAGGATCA ATTTACGGTG GCGTGGCTAG CCCAACAGAA
GCCTCGGCCG TTGCCTGTGT GTACGCATAC TTTATTGCGG TATTTGGCTA TCGTGATATT
GGTCCATTGA AAAATGTCGC ATGGCGTAAC CCTAATGAAG CCATTCCAAG CGCTATCGCT
CGTAACTTAG GTCATATGGT GCTTGGGCTG ATTAAAACCC CTATCGACAA AGAGATCCGC
CATGTAGTGC GTGATGGTGC CAAGGTCAGC ATAATGCTGC TGTTTATTAT TGCCAACGCC
ATGTTGTTTG CACACGTGCT CACCACTGAA CGTATTCCAC ATATTATTGC CGAGTACATT
GTGGGCATGG GCCTACCGGC TTGGGGCTTC TTAATCATTG TTAACTTACT GCTGTTAGCC
GCCGGTAACT TTATGGAACC ATCTGCCATC GTATTGATTA TGGCACCTAT CCTATTCCCC
ATTGCCACAC AATTGGGCAT TGACCCTATT CACTTAGGTA TCATTATGGT GGTCAACATG
GAAATCGGTA TGCTCACGCC GCCGGTAGGA CTCAATCTAT TTGTGACCTC AGGTATTACT
GGCCGTAATA TTGGTTGGGT GATCCAGTCG GTATTGCCAT GGCTAGTATT TATGCTCGCC
TTCTTGATGT TGATCACCTA TGTACCACAA ATTTCCCTGT TCTTGCCAGA ATTACTGGAC
AAGCTCAACG GATATTAA
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| Protein sequence | MAIATLFCVL FICMFLGMPI AIALGFSSML TILFFSNDSL ASVALKLYES SSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDCVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVKA GYPEKFASGV ITTSGTLGIL IPPSIVMLVY AAATEVSVAK IFMAGLVPGL
LLGFLIMVVI YIVARIKNLP SIPFPGFKKL GVSSAKAIGG LALIFIVLGS IYGGVASPTE
ASAVACVYAY FIAVFGYRDI GPLKNVAWRN PNEAIPSAIA RNLGHMVLGL IKTPIDKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEYI VGMGLPAWGF LIIVNLLLLA
AGNFMEPSAI VLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTSGIT
GRNIGWVIQS VLPWLVFMLA FLMLITYVPQ ISLFLPELLD KLNGY
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