Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2580 |
Symbol | rnd |
ID | 1170282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2706706 |
End bp | 2707809 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637344408 |
Product | ribonuclease D |
Protein accession | NP_718166 |
Protein GI | 24374123 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTTTCAGT ATGTGAGTGA CGAAGCGAGC CTCAATGCCC TCGTCGCTCA ATATCAACAA AGTCCGCTAC TTGTGTTAGA TACCGAGTTT GTGCGCACTC GTACTTATTA CGCTAAGCTT GGCCTCATTC AAGCTTATGA TGGTAAAACC TTAGCCTTGA TTGACCCTAT TGCTTTGCCC GATCTCAGTG CATTTTGGGC TTTGCTGGAT AATCCGAATA TTATCAAACT GGTGCATTCC TGTAGTGAGG ATTTAGAAGT GTTTGCCCAC TATGGCCAGC GCCAACCTAC TCCCTTATTT GATAGCCAAA TCGCCGCTTC GCTATGTGGT ATGGGTCATG GCTTAGGTTA TGCCAAGTTA GTTGAAACTT GCTTAGGTGA AGTGATTGAT AAGGGCGAGT CGCGTACCGA CTGGATGCGC CGCCCTTTGA CCGATGCCCA GCTCAGTTAT GCGGCAAATG ATGTGTTATA CCTGTACCAA CTTTATCCGC AATTAGCTGA AAAGCTTCAA ACTCAGGACC GCTTAGACTG GCTCTATGAA GAAGGCGAGC GGATGACCGA AGGGCGTTTA GCCTCGCCTG ATGCCGAAAC TGCATACCTT AAGGTGAAAA ATGCCTTTCA GCTCACCGAG CATCAATTGG CTTACCTTAA AGTGTTAGCC AAATGGCGCT TAGAAAAAGC CTTAGCGCGG GATTTAGCCT TAGGCTTTGT GATTAAAGAT CATGGTTTGA TTGCGCTAGC GAAAAAACAA CCTAAGAGCA TGAGTGATTT GCTCAAACTG AACGATTTGA CCGAGCAGGA AAAGCGCATC CACGGTAAAG ATATTTTACG GGTAATGCAG ACTGCCGACT TAAGTAATCC ACCAGAGTTA GTTGATGTAT TGGCGCTTAA ACCCGGTTAT AAATCAGCCT TTAAGACCAT TAAAACCAGT TTAACAGAAC TCTGTGAGCA ACATGCCATT CTGATGGAAA TGTTAGGTTC AAAGCGTCAT ATTCATGAGT ATTTACAATG GCGTTGGGAT AAACAGCAAG GGGAATTGCC GACAGTATTA AGCGGTTGGC GCGGGGAGAT TGCGGCCGAG TCATTGGCAA AACTTGAGGT CTAA
|
Protein sequence | MFQYVSDEAS LNALVAQYQQ SPLLVLDTEF VRTRTYYAKL GLIQAYDGKT LALIDPIALP DLSAFWALLD NPNIIKLVHS CSEDLEVFAH YGQRQPTPLF DSQIAASLCG MGHGLGYAKL VETCLGEVID KGESRTDWMR RPLTDAQLSY AANDVLYLYQ LYPQLAEKLQ TQDRLDWLYE EGERMTEGRL ASPDAETAYL KVKNAFQLTE HQLAYLKVLA KWRLEKALAR DLALGFVIKD HGLIALAKKQ PKSMSDLLKL NDLTEQEKRI HGKDILRVMQ TADLSNPPEL VDVLALKPGY KSAFKTIKTS LTELCEQHAI LMEMLGSKRH IHEYLQWRWD KQQGELPTVL SGWRGEIAAE SLAKLEV
|
| |