Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2540 |
Symbol | |
ID | 1170247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2671411 |
End bp | 2671989 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637344371 |
Product | response regulator |
Protein accession | NP_718126 |
Protein GI | 24374083 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR01764] DNA binding domain, excisionase family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACGC TCAAGCCAAG CGATATCGCC CAATATTGCG ATGTTCATCA ACGCACTGTT AGCCGCTGGA TTGCTAAAGG TCAATTAAAG GGGCACAAGT TACCGGGGCG GGGTAATTAT CGAGTCTTGG TAGAAGACTT TATTAGTTTC TTACATCAAC AAAACATGCC CATGCCAGAG GCATTTTTAG CCTCAAATAA TAATGAGTTA ACGGTTGATA AAAAGTCTAT CCTTATTATT GATGATGAGT TATCAATGAG AAATGCACTT AGGCGGGCAT TGCAATCGAC GCCTTTTACG ATTTTAACGG CACAGGATGG CTTTCAAGCT GGGGTTAAAG TTATTGCTGA AAAACCAGAT TTAATCCTTC TTGACTTGTC TTTGCCTGGA TTGGATGGTT TTGAGGTAAT CCAGTTTATT CGGCAACGAC CGGATTTAGC AAAGCTTAAA ATTTTAGTGT TATCAGGGCT TTCATCAATT GAGCTAGCGG AGTCAATCAG ATTAGGAGCC GATGACGCAA TAGCAAAGCC TTTTGATAAT CATGATCTAT TGGACAGAGT AAATATGCTA TTAAGCTAG
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Protein sequence | MKTLKPSDIA QYCDVHQRTV SRWIAKGQLK GHKLPGRGNY RVLVEDFISF LHQQNMPMPE AFLASNNNEL TVDKKSILII DDELSMRNAL RRALQSTPFT ILTAQDGFQA GVKVIAEKPD LILLDLSLPG LDGFEVIQFI RQRPDLAKLK ILVLSGLSSI ELAESIRLGA DDAIAKPFDN HDLLDRVNML LS
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