| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2444 |
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| Symbol | thiDE |
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| ID | 1170159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2556957 |
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| End bp | 2558537 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637344277 |
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| Product | phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative |
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| Protein accession | NP_718034 |
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| Protein GI | 24373991 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACCC CGACTAAGCA TTTCAACCAC TTGGTGCCTA AACCTATCGT CTGGACCATT
GCGGGGTCGG ACAGTGGTGG CGGCGCGGGG ATCCAAGCCG ACTTGGCTAC CATCAATGAT
TTGGGCGGTC ATGGATGCAG CGTGATCACC ACATTAACAG CGCAAAGCTC GGTGGCGGTG
GATTTAGTTG AGCCAGTAAG TGAAGCGATG CTACTTACGC AGCTTTCGAC CCTATTAGCC
GATCTACCGC CTCAGGCGAT TAAGATTGGT TTACTTGCGG ATCAGCAACA ATTGCAATTA
CTTGCAGATT GGCTCGCGAA CTTTAAAACT CACTATCCGC ATGTACCCGT TATTCTCGAC
CCTGTAATGG TAGCAAGCTG TGGGGATGAA CTAGGGAATA GGAGTACGCC ACTGGATTTT
AGCCGCTTTA AGGGCTTGAT TAGTTTAATC ACACCCAATG TGAAGGAGTT AGCCAGACTC
ACTTCATTCA CTGATGCTCA AACCATTCCG TCAAAAATGA CGAAGGCTGA TTTTGCCGCT
GCGGCAATAC AATTAGCAGA GCAATTAGGC TGTAGTGTGC TCGCTAAAGG CGGGGATAAT
CGTTTTGATC CGCATCTGGC TGAGGACCTG TTGGTGTGCC ACGATGTTGC AGGCTGCTCT
GAGCTTGATA GTCATGGCCA TTTTTGGCTG GTTAGCGATC GTATCGACAC CGTTCATAAT
CATGGCAGTG GCTGCACTTT ATCCTCGGCC ATAGCCTCAG TGCTGGCCTT TGGCTTTGTA
TTGCATGATG CGATAGTGGT CGCTAAGGCT TATGTCAATC AAGGGCTAAC CCATGCGCGG
GGTTTAGGTC ATGGCCCAGG GCCTTTGGCT CGCACCACCT GGCCGCATTC ACTACTTCAG
TACCCCAAAA TTGTGGCGGT TTGCGCAGAT AAACAACCGC AGCCTTATGC GTTTAAACGG
CTTACCACAG ATTTAGGGGT TTACCCTGTG GTTAATAACC TGCTGTTACT GGAGCAATTA
TTGGCTGCTG GCGTAAAAAC CATCCAGCTT AGGGTTAAGT CTGACGCAGG AATTACCGCA
GCAGAACTTG AAGCGCAAAT TCAAACGGCT ATCGCCTTAG GCAAGCATTA TGATGCTCAG
CTTTTTATCA ATGATCATTG GCAATTAGCG ATAAAGCACG GGGCATTTGG GGTTCATCTT
GGCCAAGAAG ATCTCGCTAT GGCAGATCTA AACGCAATTC ATGGCGCGGG GTTGGCGCTG
GGCATCTCAA GTCACAGTTA TTTTGAGCTG CTGCGTGCTC ATCAACATGC GCCATCTTAC
ATTGCCCTTG GGCATATTTT CCCGACGACA ACCAAGCAAA TGCCATCGGC GCCGCAAGGG
TTATTCAAGT TAGCGCATTA TGTTGAACTG TTAAAAGCGT ACTATCCCTT AGTGGCAATT
GGTGGCATAG GGCCTTCGAA TCTTGACCAA GTCAACGCGA CAGGGGTGAG AAATATTGCC
GTGGTGCGCG CAATTACTGA GGCTGATGAT CCGATTGCTG CATTGGCCGA GTTGACGCGG
GCATGGGAGC AGGGCCGATG A
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| Protein sequence | MMTPTKHFNH LVPKPIVWTI AGSDSGGGAG IQADLATIND LGGHGCSVIT TLTAQSSVAV
DLVEPVSEAM LLTQLSTLLA DLPPQAIKIG LLADQQQLQL LADWLANFKT HYPHVPVILD
PVMVASCGDE LGNRSTPLDF SRFKGLISLI TPNVKELARL TSFTDAQTIP SKMTKADFAA
AAIQLAEQLG CSVLAKGGDN RFDPHLAEDL LVCHDVAGCS ELDSHGHFWL VSDRIDTVHN
HGSGCTLSSA IASVLAFGFV LHDAIVVAKA YVNQGLTHAR GLGHGPGPLA RTTWPHSLLQ
YPKIVAVCAD KQPQPYAFKR LTTDLGVYPV VNNLLLLEQL LAAGVKTIQL RVKSDAGITA
AELEAQIQTA IALGKHYDAQ LFINDHWQLA IKHGAFGVHL GQEDLAMADL NAIHGAGLAL
GISSHSYFEL LRAHQHAPSY IALGHIFPTT TKQMPSAPQG LFKLAHYVEL LKAYYPLVAI
GGIGPSNLDQ VNATGVRNIA VVRAITEADD PIAALAELTR AWEQGR
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