Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2380 |
Symbol | |
ID | 1170099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2482458 |
End bp | 2484422 |
Gene Length | 1965 bp |
Protein Length | 654 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637344217 |
Product | RecQ domain-containing protein |
Protein accession | NP_717970 |
Protein GI | 24373927 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTATT CAGCGTCTCA GCCTGACGAA GGCTCAGCTT TAATCTCACG ATTACAGCAA CAATTTGGTT TTTCAGAATT TAGACCGGGC CAAGGTGAGG TTATCACTCA GCTATTAGCG GGCCAATCGA GCCTGGCGAT ATTTCCAACG GGCTCAGGAA AATCACTCTG TTACCAATTT ACCGCGCTTC AGCTTCCCCA TTTAACCTTA GTGGTTTCAC CTTTGTTGGC CTTGATTAAA GATCAATTGA ATTTCTTGCA ACAGAAGGGC ATTAAAGCGG CAAGTATCGA CTCAACTTTA ACGCCAGAAC AGACCCAACA GGTCATGCGA GAGGCGCGTT CAGGCCAGTT AAAATTGTTG ATGGTGTCAG TTGAACGCTT CAAAAATGAA CGTTTTCGGC AGTTTATTCA ATCTATTCCA CTATCAATGC TGGTTGTGGA TGAAGCCCAC TGTATCTCCG AATGGGGGCA TAATTTTCGT CCCGATTATT TGAAATTACC CGATTATTGC CGTGAGTTAT CGATTCCGTT AGTGCTGTTA CTCACCGCTA CCGCAACGCG AAAAGTCAAA CAGGATATGG CGATTCGTTT CGATATAAAG CCACAACACA TTGTGCAAAC AGGTTTTTAT CGGTCAAATC TTGATTTAAC AGTGCTACCT GTTGCCAGTG AAAATAAATT ACGAATACTC AAGCAACAAC TACAAAGTTT TGATGGTGCG GGGATTGTCT ATGTGACGTT GCAGCATACA GCGGAAGAAG TTGCATCACA ACTTTGCAGC ATGGGCTTTG TTGCTCAGGC TTACCATGCG GGGTTTGATG ATGATAAACG TCAGCAAATT CAGCATGATT TTATGCTAGG TCAGACTCAA ATCGTCGTTG CAACCATCGC CTTTGGCATG GGGATTGATA AAAGCAATAT CCGTTTTGTG ATCCACTATG ACTTACCTAA ATCCATCGAA AACTACTGCC AAGAAATTGG TCGCGCAGGG CGTGATGGGC AACTTTCCCA TTGCGTTACC TTAGCTAATT TGGATGGTAT CAACACTGTA GAAAACTTTG TGTATGGCGA CACACCGGAG CTAGCAAGTA TTGCCACCGT GATTGACAGC ATTAGCCAAG AAACCCAAGC TAATTATTGG GAAGTGCAAC TGAATCAGTT AGCCAATCAG AGTAATATTA GATTGCTGCC ACTTAAGACT CTTCTGGTAC AGCTTGAACT TCAGGGCGTG ATCAAACCGC TTTATGCCTA CTACGCTGAT GTTCAATATC GATTTCTCCA ACCTCAAGCG CACGTATTAA GTCAGTTTTC ACCTGAGCGT CAGGCATTTT TAACCCAAAT ATTTACGCAC ACCCAAATGA AACGTGTTTG GGGAAGTTTA GATTTTAATG CGCTTTATCA GGCCACGGGA GCTGAACGCA ACCGCGTGTT GGCGGCCTTA GAATACCTTG CAAGTCAGCA ACTCATTGAA TTAGAAACCA AGCAAATTAC CGATGTATAT CAGGTGGAAA CCGTCAAATT GTCTACGCCC ACGTTAGCAA AAGATCTCTA TCACTATTTT GCCGATAAGG AAGCCAAAGA AGTGGCTAGG ATTGCCCAAT TAGTGCGATT CTTTGAGCTA ACAACTTGCT TAAATTACAA TTTAGCGCGC TATTTTGACG ATAATGCAGC ACCTAAATCC TGCGGTCATT GCAGTGTTTG TCGCGGTCAA GTGGCCAAAC TCACGTATTC CAATACGCCA ATTTGGCCAG AGGATCAGCG TATTTGTGCC GATCTTAACG AACTTAACCA ACTCGTTAGA AGTAAAGGTA TGGTGCCACT TTCCCTTGAA ACCCAATGCC GCTTTTTAGC GGGAATGAGT CTGCCGATCT TCACCCGTTT ACAAGTGCGT AAACTTGCAG GTTTTGGTCG CTGCGAAAAT TTAAGGTATG CCGAAATAAA ACAAAGATTA CAACATTTGA TTTAA
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Protein sequence | MSYSASQPDE GSALISRLQQ QFGFSEFRPG QGEVITQLLA GQSSLAIFPT GSGKSLCYQF TALQLPHLTL VVSPLLALIK DQLNFLQQKG IKAASIDSTL TPEQTQQVMR EARSGQLKLL MVSVERFKNE RFRQFIQSIP LSMLVVDEAH CISEWGHNFR PDYLKLPDYC RELSIPLVLL LTATATRKVK QDMAIRFDIK PQHIVQTGFY RSNLDLTVLP VASENKLRIL KQQLQSFDGA GIVYVTLQHT AEEVASQLCS MGFVAQAYHA GFDDDKRQQI QHDFMLGQTQ IVVATIAFGM GIDKSNIRFV IHYDLPKSIE NYCQEIGRAG RDGQLSHCVT LANLDGINTV ENFVYGDTPE LASIATVIDS ISQETQANYW EVQLNQLANQ SNIRLLPLKT LLVQLELQGV IKPLYAYYAD VQYRFLQPQA HVLSQFSPER QAFLTQIFTH TQMKRVWGSL DFNALYQATG AERNRVLAAL EYLASQQLIE LETKQITDVY QVETVKLSTP TLAKDLYHYF ADKEAKEVAR IAQLVRFFEL TTCLNYNLAR YFDDNAAPKS CGHCSVCRGQ VAKLTYSNTP IWPEDQRICA DLNELNQLVR SKGMVPLSLE TQCRFLAGMS LPIFTRLQVR KLAGFGRCEN LRYAEIKQRL QHLI
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