| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1949 |
|---|
| Symbol | |
|---|
| ID | 1169709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2052016 |
|---|
| End bp | 2055729 |
|---|
| Gene Length | 3714 bp |
|---|
| Protein Length | 1237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637343832 |
|---|
| Product | invasin domain-containing protein |
|---|
| Protein accession | NP_717556 |
|---|
| Protein GI | 24373513 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG CGTATAAGGT TTTTCTCGCA GGATTATGTT CACTTTTCTT GGTTGCATGC
GGAGGTGGAG GTAGTATCAC CGACGATGGC ACTGGCCCCA CGCCCACCCC AAGTGTTATC
ACTGTTTCAT TGAGTATTTC TAACAGTGAT AATGTTTCAT TAGCTACTCC TGCTGAGGTA
AAAGCAACAG TAGTAGACTC TAAGACTGGC CCTAAAGCTG GAGTGGTTGT TACATTTAAA
CTTGATAATG CTTCATTAGG CATCTTCACT CCAGCAACAG GGACACAACT AACGGATTCG
TCAGGTGTTG CAACAATAAA ATTAGAAACA GCAACGCTAG CTGGAGCAGG TAACGTCACA
GCAAGTATTG CAACTGGAGA GTCAGCTACA AAGGGTTTTT TCTCAAAGGG TGATGGAGTT
ACCAATCCTG GTACAGGCAA TAAGTTAGCG CTTTCTCTTG TAAATCAGCA GCAGCAAGTT
ATCACAGGTA TAAGTGCGGC AGTTCGGGGA ATAATTAAAG CCTCTTATAC TAACAGCTTG
AATGAGCCCC TTGTTGGCAA GGTTGTTGTA TTCAACTCAA CGTTAGGTAA ACTGTCCCCT
GAATCTGGAA CTGCCCTGAC TAACTCACAA GGAATAGCTG AAATATCGAT TACCGCTGGC
ACCATTGCTG GAGCGGGCAA AATTACAGCT AAAGTAGATG GTACTGAAGC TGAACCTCTT
GGATTCAATA CATTAGGGGA TGAGGTTGTT GTTAAACCCA TAGATTCATA CGCCATAACA
CTAAATATTC AAGACTCACA AGGTAATAAT TTAAGAAAAA TTAGCCATAG TGTACCTGGC
TCTGTGGTTG CTACTTTGTT AAAGGATGGA GTTCCTGCAA GTTATCAAAA GATTTCCTTC
AATCTAAACG GTGAAGGTAT TCTAAATCCA TCCTCTGGTA CAGCATTAAC TGATTTAAGT
GGTCGAGCTC TAGTTACACT TGTTACTGGA ACAAATGCTG GTGCTGCAAC TGTTACTGCA
AGCTTCTCTC TCGACAATGA CATTATTACT GATAGCTTCA ACGCTGAAGT TGCAGGTGAC
GCCCCCGGTG GTAATGGTGA AGCTAATTCT TTATCGATTC AATTAACCAA TAGCCTTACA
GGTCTATCAA CTACAAATAT CAGTGCTAAC CAACCAGCGA AGGTTACTGT TACTTTAGTC
GATAAGGACT CAATTCCTCT AAGCGGTAAA GTCGTAAGTT TTGCAAGCAG TTTAGGTAAT
TTTTTACCTT CTAAAGGCAC TGCACTTACT GATTCTATTG GTCGAGCATC AATTACTTTG
ACCGCCGGTA GTATTGAAGG CGCTGGCGAA ATTACTGCTA CTTACGGAAC GGCTAAAGCC
ATTATTGGAT TTGCTACAGC AGGGGATGAA ATAGATCCAG TAGAGGCTAG TCCAGAAATC
ACATTTGATA TATATAATTG TAATGGTGTT GCAGCTTGGG ATAAAACACT AAAGAACTTT
GAAGTTTGTC AACCCACAGA CAATATCACT AATGATAAAC CAGGCATCAT AGGGGCTAAA
GTTACTCGTT CTGGTAGTAC GCAGCCTTTG CAACAAGTGC TTGTTACTGC AGCAACAACA
TTAGGAGCAA TAAGCCCTAA TTCTGGTACA GCTATTACAA ATGCTGATGG TAAAGCGATT
TTAGATCTAT ATGCTAATGG TAGTGTTGGT GCGGGTGAAG TATCTTTAAA AGTGAAAGAT
GTTACCTCAA CGAAAGCGTT TGAAATTGGC AGGGTAAACA TTTCTCTAAA ACTAGAAACC
TCTCTTGGTA CAAATTTACT ACCTGCTGGC GGTTCTACCA TTTTGGATGT CACGGTTTTA
AATCCAGACG GTTCATTAGC AACTGGTCAA CCTTTTACTC TTGTATTTAC TTCTGAATGC
CAAGCATCAA ATAAAGCAAT AATTGACTCT CCTGTTATTA CAAATGGTGG GAAGGGGTAT
GCTACCTATC GAAGTACAGG GTGTGAGACA CAAGATACAG TATCTGTTTC TGCTATAACT
GGCGGGGGAA GTGTAAGTTC AACTGCAGTT ATAAATATTG ATTCTATCAA AGTTGGTGCT
TTGCAGTATG TTTCAGCTAA TCCGACATTG CTGGCCTTGC AAGGTACAGG AGGAATCGCT
GGTGCAGGAT CTCGTTCTGA AACATCAGTA GTAACATTTA AGTTACTAGA TGAGACTGCT
GCGCCAGCAG GGCAAGAAAG AGTTTGTTTT GAGTTAAGTA CTGAAGTAGG GGGTATTAGC
TTAAGTCCTG CTCCTTTAGC GCAAGATTAT CTCGATTGCC CTAATTTTCC AAAGCCGAAT
ACTTCTAACT ATCCTGTTGA TTTAAATGCT CCAAATAAAT ATGCCGTTGC TGTAACAGAC
AGTGCAGGAT TAGCATCTGT TATTGTTAGA AGTGGTGATA GAGCGACTCC TGTAAAAGTG
TTTGCATTAT GGGCTGGCAG TACTGCTGCA GGTCATAATG GTGTTATTTC AAATGTGTCA
GATCAGCTGG CGATCACAAC TGGCCTTGCA GATGCTAATA GTTTCTCTGT CTCTGCATCT
ACGTTTAATC CTGAAGGTTG GGATTATGAT AATGAACTTG TAGATATTAA TGTTTTAGCA
GCGGATCATT TTAATAACAT GGTTCCAGCA GGAACAGTAA TCGTTTTTAC TGCAGAAGGA
GGTGCTATAC CAGGCTCTTG TACAACGGGT GGTTTAACTA ATCCTGATGG TGCTTGCAGT
GTTCAATGGC GCAGTCAGAA CCCTAGACCT TTTGACACTA CACTTGTGAA ATGCCCCGAG
TCATTTAATG GTGACTTTAA TCCTCCTTGT ATGGGAACAT TAAAGTCGCA ATTTGATTCA
GGTAAAAATT CATTATTACC TGAACCTAGA CCAGGTCGAG CGACTATCAC TGCTTATGCT
ATTGGTGAGG AAAGTTTTGT TGATTTAAAT GGTAATGGCT TGTTTGATTT TGTTGATACA
AATGGCGATG GTGTAATAGA AATAGATAAG GGTGAGACTG AACCTTTTAC TGATATCTCT
GAGGCTTTCA CAGACCATAA CGAGGATGGT TTTTATCGTA AAATATCACA GAGTTCCTCA
TTAGCTGATT TGCTTATCCA ACCTGCGGGT GCAGTAAACG AGGAATTTGT TGATTATAAT
AGTGATGGTA AATTTAATAA AGCTGATGAA AAGTATACAG GGCTATTATG TGCTTCTGGT
TCCGGACTAG CCTGTTCTGA TACTGGTTTG GATGATAATA GAGCCCAGTT AAATATATTC
AAAAACATAC CCATCGTTAT GTCAGGCAGT ACACCTATGA TACGGTTAGT TTCTATTGAT
GGTGATACGA TGACCGCAGT TTCTGAAATA GATCTAATTG ATAGAACTGA TCCAACAAAA
CCTGTAGCGA AAGGGCCTCA GACTGTATAT TTGTTTGTTT CTGATGTTAA TAACAATACG
TTGCCTTTCG AGACTAAAAT AAGTACTTCC ATAGATAACG GCAAGCTTAT CGTTCCAGTA
GGAGGAAGTT ACTCAATTGC AAGTAATGCA TCGAATAAAC CATTAGTATA TGCATTTACA
ATCGGTCAAG AAGACAAGCC TAACCAAAAA CTCTCTGGTG CCCTTGTTAT TACTGTCAAA
ACACCGAAAG GCTCACCTGT GAGTGTGGCT GTGAATATTA CTGATGGTGG TTAA
|
|---|
| Protein sequence | MKSAYKVFLA GLCSLFLVAC GGGGSITDDG TGPTPTPSVI TVSLSISNSD NVSLATPAEV
KATVVDSKTG PKAGVVVTFK LDNASLGIFT PATGTQLTDS SGVATIKLET ATLAGAGNVT
ASIATGESAT KGFFSKGDGV TNPGTGNKLA LSLVNQQQQV ITGISAAVRG IIKASYTNSL
NEPLVGKVVV FNSTLGKLSP ESGTALTNSQ GIAEISITAG TIAGAGKITA KVDGTEAEPL
GFNTLGDEVV VKPIDSYAIT LNIQDSQGNN LRKISHSVPG SVVATLLKDG VPASYQKISF
NLNGEGILNP SSGTALTDLS GRALVTLVTG TNAGAATVTA SFSLDNDIIT DSFNAEVAGD
APGGNGEANS LSIQLTNSLT GLSTTNISAN QPAKVTVTLV DKDSIPLSGK VVSFASSLGN
FLPSKGTALT DSIGRASITL TAGSIEGAGE ITATYGTAKA IIGFATAGDE IDPVEASPEI
TFDIYNCNGV AAWDKTLKNF EVCQPTDNIT NDKPGIIGAK VTRSGSTQPL QQVLVTAATT
LGAISPNSGT AITNADGKAI LDLYANGSVG AGEVSLKVKD VTSTKAFEIG RVNISLKLET
SLGTNLLPAG GSTILDVTVL NPDGSLATGQ PFTLVFTSEC QASNKAIIDS PVITNGGKGY
ATYRSTGCET QDTVSVSAIT GGGSVSSTAV INIDSIKVGA LQYVSANPTL LALQGTGGIA
GAGSRSETSV VTFKLLDETA APAGQERVCF ELSTEVGGIS LSPAPLAQDY LDCPNFPKPN
TSNYPVDLNA PNKYAVAVTD SAGLASVIVR SGDRATPVKV FALWAGSTAA GHNGVISNVS
DQLAITTGLA DANSFSVSAS TFNPEGWDYD NELVDINVLA ADHFNNMVPA GTVIVFTAEG
GAIPGSCTTG GLTNPDGACS VQWRSQNPRP FDTTLVKCPE SFNGDFNPPC MGTLKSQFDS
GKNSLLPEPR PGRATITAYA IGEESFVDLN GNGLFDFVDT NGDGVIEIDK GETEPFTDIS
EAFTDHNEDG FYRKISQSSS LADLLIQPAG AVNEEFVDYN SDGKFNKADE KYTGLLCASG
SGLACSDTGL DDNRAQLNIF KNIPIVMSGS TPMIRLVSID GDTMTAVSEI DLIDRTDPTK
PVAKGPQTVY LFVSDVNNNT LPFETKISTS IDNGKLIVPV GGSYSIASNA SNKPLVYAFT
IGQEDKPNQK LSGALVITVK TPKGSPVSVA VNITDGG
|
|---|
| |