Gene SO_1417 details

Gene Information

• Locus tag: SO_1417
• ID: 1169236
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1473777
• End bp: 1475582
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637343359
• Product: sensor histidine kinase
• Protein accession: NP_717037
• Protein GI: 24372995
• COG category: [P] Inorganic ion transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component; [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCAAT TCTTCACTCG ATTAATGTTT ATCCTGGCCC TTTTTATCGA CTTCAACTTG 
CCAGTCATTG CCGCCGATAG CCATGCAAAT GATCCGGTGC GGATTGGTAT CATGGCATTT 
AATGAGCCTG ATGAAGTCAT GGCCAATTGG CAGCCTACCG CTGATTGGCT GAGTCAACAA 
CTACATCGTC CAGTACAACT CATGCCATTA ACGCCATCTC AATTAGATGA AGCATTAGTT 
AAGCAAAGTA TCGACTTTTT AATTGGCAAT GCCCTTACCA CGGTCGCCTT TAAAAGAAAC 
TATGGCACCA GTCACTTACT CACCCTTGTC CATAACCGAG TTCGTTCACC AGAACAGAGC 
ATAGGTTCAG CCATCGTCGC ACGAATTGAC AGCAACCTAA GCCAATGGGA CCAACTTAAA 
GATGAAAAGT TAGTATCAAG CGACCCACAA GCCTTTGGTG GATTTCAAAT TTTTGCAGCG 
ACGATGGCAA CCAAAGGCAT CAATGCCTAC CGCGATATCC CCAAGCTGCG CTTTATTGGT 
TTTCCACAGC AAAAACTGTT GCAAATGGTG CTATCGGGTG AAGCTGATAT TGCGGTATTA 
CCTAGCTGCG TTTTAGAAAA CGCATTAGAT AAAGGGCTGG TTCCAGCCAA TAAATTAAAA 
GTCGTGCTTA AACAACCGCA TCCAGATTTT GCCTGCGAAG TATCGACTCA ATTATACCCC 
GGCTACGCCT TAACAAAATT AGGCCATACG GATCATAAAC TCGCGACGCA AGTGGTCGCA 
AGCCTGTTGC AAATTACCCC AGACACTCCA GCGGCTCAGC AAGGAAGATA TCAATATTGG 
TCAGCTCCTG TGGACGATAG CCCGGTATTT GAGTTGTTAA AACAATTAGA GCAATGGCCA 
TTTGTCACCA ACTGGCAGCG ATTACTGCAC AATGCCTTAC CTTGGGGCAC AAGCCTGATC 
TTTGTCTTAC TGCTAGGCTA TATTCATCAC TTAAGGGTTA AGCGCTTAGT AGTCAAACGC 
ACCCAAGCTT TATCCGATGA AATAACCCAT CATCAGCACA CCCAAAAAAT CCTACTTGAG 
CAACAACAAC AGTTTTATCG CGCCCAGCGG GTGCTACTGA CGGGCGAAAT GGCCTCCGGC 
ATTGCCCACG AGCTTAAACA ACCCTTGGCC GGTATTCGCT ATCTCACCCA AGGCTGTTTA 
TATCGGCTAG ATAATACCCA AGCCGAGCTT GCTACCGCGC TTAATAAGGT CATCAGCCAA 
GTCGATAGAG CCCAAACCAC CATCCATCGG CTGCGCACCT TTTGCCAACA AACCAGTGAC 
TACCAATCCT GCGATTTACG CACAGTGATA GAAGAAACCT TGACCTTGAT GCAACCTGAA 
TTTCAGCGGC TCAAACTCAG CCCTAAGGTC AACTTACAAG CCTTACCGGT ATTTGCCGAC 
GCCAGTTTGA TGCAGCAAGT GCTGGTGAAT TTATTACGCA ATGCACTCGA TGCCATGGAA 
AGCATCCCCC AAAAATCACT GTTTATCGAC ACGGGGATTA CAGGTGAAAA CGTCTATATT 
CACATCACCG ATGCGGGCTG CGGCCTTAGC GATAGCGCGT TAAAGCGATT ATTCTTTCCC 
TTTGAAACCT CTAAACCTCA GGGACTTGGC TTAGGCATGG TGATCTGCAA ACGTATTATT 
GAAGAACACA AAGGCAAAAT TGAAGCCCAC CACGCCAATC CAGGATTAAC GATTAAAGTC 
ACCCTGCCAG TCAATTCGCA GCCAGGCTTA GGAGAGCAAA ATGACACCGC TTTACCTCGT 
GGATGA 

 

Protein sequence

MSQFFTRLMF ILALFIDFNL PVIAADSHAN DPVRIGIMAF NEPDEVMANW QPTADWLSQQ 
LHRPVQLMPL TPSQLDEALV KQSIDFLIGN ALTTVAFKRN YGTSHLLTLV HNRVRSPEQS 
IGSAIVARID SNLSQWDQLK DEKLVSSDPQ AFGGFQIFAA TMATKGINAY RDIPKLRFIG 
FPQQKLLQMV LSGEADIAVL PSCVLENALD KGLVPANKLK VVLKQPHPDF ACEVSTQLYP 
GYALTKLGHT DHKLATQVVA SLLQITPDTP AAQQGRYQYW SAPVDDSPVF ELLKQLEQWP 
FVTNWQRLLH NALPWGTSLI FVLLLGYIHH LRVKRLVVKR TQALSDEITH HQHTQKILLE 
QQQQFYRAQR VLLTGEMASG IAHELKQPLA GIRYLTQGCL YRLDNTQAEL ATALNKVISQ 
VDRAQTTIHR LRTFCQQTSD YQSCDLRTVI EETLTLMQPE FQRLKLSPKV NLQALPVFAD 
ASLMQQVLVN LLRNALDAME SIPQKSLFID TGITGENVYI HITDAGCGLS DSALKRLFFP 
FETSKPQGLG LGMVICKRII EEHKGKIEAH HANPGLTIKV TLPVNSQPGL GEQNDTALPR 
G