Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1102 |
Symbol | |
ID | 1168935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1143783 |
End bp | 1145834 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637343053 |
Product | TonB-dependent receptor domain-containing protein |
Protein accession | NP_716728 |
Protein GI | 24372686 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAGTC GCTATTTTGT CATGTCGCTG ACCGCGCTTG CGGTTTCCTG TGTTTACGCT AATTCACTTA ATGCAAATCC CCTCTATTCT CAAACACTTG ATTTAGCGAA GCTCAATGAT CAGTATCATT CTACCGATGA TGCAATGCAG TTAAGCAATC TCAATAGCCT AACGCTGCTT CGGGCTGACC ATAGTGGCAA TTCCGCCAAT ATCAGTATGC GCTCAGCCAC CCAAGGTGTG GCTGTGATGC AAGATAGAGT GTATTTCTCA CCTGCGCCCT ATTCGGCACC GCAATTGCAG CTATTACCCC ATCTTTTGTT GCAGCAAAGT GTGACGACTA CGCCACTGGC CAATATGGCT GTTGGTGGTC AGGGATCATT TGGCGTGGTG GACTACCAAA GCCTTAACAT TATTGAACGC TCACAATCTG GCAGTGTTCA AATCGAGGGG ACGACGGATT CAGATGTGAA TGCGGGCATG CGTTGGGGCG TTAATCAAAA AGAATACGGT GCCTTATTTG CGGCTAATTA TATTAAAGAA CAAGGTGATG CGATTTTTTT CAACGGCAGC GATGCTGACA GAAAAAAAAT GGATATGTTG TTTAAGGTCA ATGCTTCAAG CTTACTTGGC GCCCGCAGTC CGCAGCAAAC GGAATTTACC TATCAATTTA TCGATGATGA TAGTTACCGT TCATTGCTTG GGATCACTGC CGCCGACTGG CAGCAGGATC CTTTGCTGCT GTATTCCGCT ACCGCACAAG ATAAACATCA AGGACGGCAA CATAAATACC AGTTATCACA TCAAGTCAAC TTAGGTGATA GCAAGGTGAT GAGCGACTTT TACTATCAAT TCTATTCACA ACGACTGGAT CAGCTTGGCG CGTTTAATGG GCAAAATATT GGCTTGGGAA CGCTTTACGA CATTGCCGCC TTCGATCGTA ATCCCAGTGC GAATGGCGCC GATGTAAATA TGTTGGTGCA AGACAATGAT TACAGTGCAT TCGGTGCCCA GACTCAGTCG ATAAACCAAT ACGGCGAACA TCAAATTACC TACAGCGCTC GTTATCATAC CGATAAAGCC GAGATGCGTT TTGGTGATCA AACTGCATTA TGGCAAGCTG ACAGAAGTAT CGTCCGTGAT GAGTCTAATG CGGTGTTAGC CTACACCGAT GATGCCACGG CGCTGACGTC GGCAATCGAC TCTTTATGGC GTTGGCAGGG CATGCAAATC AAGTTAGGGC TTACTTACGA GCATGTTAGT GTTAATCGTG AAGTGAGCTT AGCTTTTGCT GGGCTTGACG AAGCGGACTT TTCTGATAGC GATTGGATGC CGCAACTTGG TGTGCTTTAT GATGCAGGCG ATTGGCGTTT TAGTACCGAT ATACGCCGGG CATGGGCTGC GGCGAGTGCG GGTAATCTTA CCCAAGACGC TCAGGAATCG CTTCATTATC AAGTCAGTGC CCAATATGCG AGTGACGGCA TTAAGGCTGA TTTGCGGGCT TATGTGCAAG AATTTGATAA TCTTCATGTG GATTGTGATA GTTACTCCAT GTGCGTCGAT TCTCGTCTGC TAACTCAAGA AAATATACCC GATGTGCTTA CCTATGGGGT TGAATTCGGC CTGGGCTATC GCTCGATGTT GGGTGAGCTT GAATTACCCT TAGAGCTAAG TTATCAGTAT CTTAGCGCTG AATATCAGAC GAGCACCTGC ACCGATATCC AAGGTTGCGT CCTGGAGGGC GACAAACTGG CTTGGTTACC CGAGCACCAA TTGCAATTGA GCGCGGGGAT TGAATACGCC CAATATCAAT TAAACCTTGT CGCTGCTTAT CAATCTGAGC GTGATTTCAG TCAGTATGGT AGTGAGTTGC AGCGTGTTGA CGGTCAATGG CGTGCCGATA TAGCGGCAAA TTACGATATT GATAAGCACC ACAGGGTGTA TTTTCGCCTT GAAAACCTAT TCGATGAATC TTTAGTGACA ACAGTATCAA ATAGTGGAAT TCGAACTGAA AATGGACGGA TCAGCTATTT AGGTTATCAA TGGCGGTTCT AA
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Protein sequence | MSSRYFVMSL TALAVSCVYA NSLNANPLYS QTLDLAKLND QYHSTDDAMQ LSNLNSLTLL RADHSGNSAN ISMRSATQGV AVMQDRVYFS PAPYSAPQLQ LLPHLLLQQS VTTTPLANMA VGGQGSFGVV DYQSLNIIER SQSGSVQIEG TTDSDVNAGM RWGVNQKEYG ALFAANYIKE QGDAIFFNGS DADRKKMDML FKVNASSLLG ARSPQQTEFT YQFIDDDSYR SLLGITAADW QQDPLLLYSA TAQDKHQGRQ HKYQLSHQVN LGDSKVMSDF YYQFYSQRLD QLGAFNGQNI GLGTLYDIAA FDRNPSANGA DVNMLVQDND YSAFGAQTQS INQYGEHQIT YSARYHTDKA EMRFGDQTAL WQADRSIVRD ESNAVLAYTD DATALTSAID SLWRWQGMQI KLGLTYEHVS VNREVSLAFA GLDEADFSDS DWMPQLGVLY DAGDWRFSTD IRRAWAAASA GNLTQDAQES LHYQVSAQYA SDGIKADLRA YVQEFDNLHV DCDSYSMCVD SRLLTQENIP DVLTYGVEFG LGYRSMLGEL ELPLELSYQY LSAEYQTSTC TDIQGCVLEG DKLAWLPEHQ LQLSAGIEYA QYQLNLVAAY QSERDFSQYG SELQRVDGQW RADIAANYDI DKHHRVYFRL ENLFDESLVT TVSNSGIRTE NGRISYLGYQ WRF
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