Gene SNSL254_pSN254_0066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_pSN254_0066 
SymboltraD 
ID4929485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_009140 
Strand
Start bp49378 
End bp51243 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content53% 
IMG OID642572370 
Producttype IV conjugative transfer system protein TraD 
Protein accessionYP_001101945 
Protein GI134047236 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATGA GTTATGACCC GCTCGCCTAC GAGATGCCGT GGCGGCCCAA CTATGAAAAA 
AATGCTGTAG CAGGCTGGCT TGCCGCCTCC GGCGCGGCTT TGGCCGTAGA GCAAGTCAGC
ACGATGCCTC CGGAGCCCTT CTATTGGATG ACGGGGATCT GTGGCGTGAT GGCGATGGCT
CGTTTGCCAA AGGCTATCAA ACTTCACCTG CTCCAAAAGC ATTTGAAGGG GCGTGATCTG
GAGTTTATTT CTATTGCGGA GCTCCAAAAG TACATCAAGG ACACGCCGGA CGATATGTGG
CTTGGTAGTG GGTTCCTGTG GGAAAACCGC CATGCCCAGC GCGTGTTTGA GATCCTGAAA
CGCGACTGGA CTTCCATCGT AGGGAGAGAG TCCACGGTCA AAAAGGTTGT CCGGAAGATA
CAGGGTAAGA AAAAGGAGCT GCCAATCGGC CAGCCCTGGA TTCACGGGGT AGAACCCAAA
GAAGAGAAGC TGATGCAGCC ACTCAAGCAC ACTGAGGGGC ATTCGCTGAT CGTTGGGACC
ACCGGCTCGG GCAAGACCCG TATGTTCGAC ATCCTGATTT CACAGGCCAT TCTGCGTGGG
GAAGCCGTGA TCATCATAGA CCCGAAAGGG GATAAGGAGA TGCGGGACAA TGCACGACGT
GCCTGTGAAG CTATGGGGCA GCCGGAAAGA TTCGTCTCAT TTCATCCAGC ATTCCCGGAA
GAGTCGGTGC GTATCGACCC TCTGCGTAAC TTCACCCGCG TGACTGAAAT TGCAAGTCGT
TTGGCAGCGT TGATCCCGTC CGAAGCAGGG GCCGACCCGT TCAAATCATT TGGATGGCAG
GCACTGAACA ACATCGCTCA GGGCTTGGTC ATCACTCATG ATCGTCCCAA CCTGACAAAG
CTCCGCCGAT TCCTTGAAGG TGGCGCTGCT GGCTTGGTCA TCAAGGCCGT TCAGGCTTAC
TCAGAGCGAG TTATGCCCGA CTGGGAGGCA GAAGCAGCGG CTTATTTGGA GAAAGTCAAA
AACGGTTCGC GTGAGAAGAT CGCTTTCGCG TTGATGAAGT TCTACTACGA CATCATCCAA
CCTGAGCACC CAAACTCTGA TCTGGAAGGC TTGCTGTCGA TGTTCCAGCA CGACCAAACC
CACTTCTCCA AGATGGTGGC GAACCTCCTG CCGATCATGA ATATGCTGAC GTCCGGGGAG
CTAGGCCCTC TGCTGTCTCC AGACTCATCT GATCTGAGCG ACGAACGCCA GATCACTGAT
TCCGCAAAAA TCATCAACAA CGCTCAAGTT GCTTATCTGG GGCTCGACTC CCTGACCGAC
AACATGGTTG GTAGTGCTAT GGGGTCCATC TTCCTGTCAG ACCTGACAGC GGTTGCCGGT
GACAGATACA ACTACGGCGT CAACAACAGA CCCGTAAATA TCTTTGTTGA TGAGGCTGCT
GAGGTGATCA ACGACCCGTT CATCCAGCTC CTGAACAAAG GTCGCGGTGC GAAACTTCGT
CTTTTCGTTG CAACTCAGAC TTTTGCTGAC TTCGCAGCTC GACTGGGTAG CAAAGACAAA
GCGCTCCAAG TGTTGGGGAA CATCAACAAC ACGTTTGCTC TGCGTATCGT CGATGGTGAA
ACACAGGAGT ATATCGCAGA TAACTTGCCG AAGACCCGGC TCAAGTACGT CATGCGGACT
CAAGGCCAGA ACTCGGATGG CAAGGAGCCC ATTATGCACG GAGGCAACCA AGGCGAGCGT
TTGATGGAGG AGGAAGCTGA TCTGTTCCCA GCCCAGTTAT TGGGAATGCT TCCGAACCTG
GAATACATAG CCAAAATTTC AGGCGGAACA ATCGTAAAAG GCCGTCTGCC CATATTGACC
CAGTAA
 
Protein sequence
MTMSYDPLAY EMPWRPNYEK NAVAGWLAAS GAALAVEQVS TMPPEPFYWM TGICGVMAMA 
RLPKAIKLHL LQKHLKGRDL EFISIAELQK YIKDTPDDMW LGSGFLWENR HAQRVFEILK
RDWTSIVGRE STVKKVVRKI QGKKKELPIG QPWIHGVEPK EEKLMQPLKH TEGHSLIVGT
TGSGKTRMFD ILISQAILRG EAVIIIDPKG DKEMRDNARR ACEAMGQPER FVSFHPAFPE
ESVRIDPLRN FTRVTEIASR LAALIPSEAG ADPFKSFGWQ ALNNIAQGLV ITHDRPNLTK
LRRFLEGGAA GLVIKAVQAY SERVMPDWEA EAAAYLEKVK NGSREKIAFA LMKFYYDIIQ
PEHPNSDLEG LLSMFQHDQT HFSKMVANLL PIMNMLTSGE LGPLLSPDSS DLSDERQITD
SAKIINNAQV AYLGLDSLTD NMVGSAMGSI FLSDLTAVAG DRYNYGVNNR PVNIFVDEAA
EVINDPFIQL LNKGRGAKLR LFVATQTFAD FAARLGSKDK ALQVLGNINN TFALRIVDGE
TQEYIADNLP KTRLKYVMRT QGQNSDGKEP IMHGGNQGER LMEEEADLFP AQLLGMLPNL
EYIAKISGGT IVKGRLPILT Q