Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0879 |
Symbol | |
ID | 6485396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 885156 |
End bp | 886286 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642736291 |
Product | inner membrane transport permease YbhS |
Protein accession | YP_002040051 |
Protein GI | 194444906 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.585114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 78 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAAGT CTCTCTCCTG GCGCCGCGTG CGTGCGTTGT GCGTCAAAGA GACGCGCCAG ATCGTGCGCG ATCCCAGTAG CTGGCTGATT GCGGTGGTGA TCCCGCTGCT GTTGCTGTTT ATTTTTGGTT ACGGCATTAA CCTCGACTCC AGCAAACTGC GGGTGGGGAT TCTGCTTGAA CAACAAAGCC AGGAGGCGCT GGATTTCACT CATGCGATGA CCGGTTCACC CTATATCGAC GCGACCATTA GCGATAACCG CCATGAATTA ATTGAAAAAA TGCAGGCCGG ACGCATTCGC GGACTGGTGG TGATTCCGGT GGATTTCGCG CAGCAAATGG CGCGCGACGG TGACAGCGCG CCGATTCAGG TGATTACCGA CGGCAGCGAG CCAAACACCG CCAACTTCGT TCAGGGTTAT GTGGAAGGCA TCTGGCAAAT CTGGCAACAG CAGCGGGCGG AAGATCGCGG CGACACCTTT GAACCGCTCA TCGACGTCCA GACGCGCTAC TGGTTTAACC CGGCGGCGAT CAGTCAGCAT TTTATTATTC CCGGGGCGGT GACCATTATC ATGACGGTAA TTGGCGCAAT CCTCACCTCG CTGGTCGTTG CCCGCGAATG GGAACGCGGC ACGATGGAGG CGCTGCTCTC AACCGAAGTG ACGCGTGTTG AACTGCTGCT GTGTAAGCTT ATTCCCTATT ACTTTCTCGG TATGCTGGCG ATGCTGCTCT GTATGCTGGT ATCGGTGTTT ATTCTCGGCG TGCCGTATCG CGGTTCGCTG GTGATTCTGT TTATCATCAC CAGTCTGTTT TTACTGAGTA CGCTGGGGAT GGGGCTGTTG ATTTCCACTA TCACTCGCAA CCAGTTTAAC GCCGCGCAGG TGGCGCTGAA CGCCGCGTTT TTGCCCTCGA TTATGCTGTC CGGATTTATC TTCCAGATAG ACAGTATGCC TGCGGTGATC CGCGCGGTGA CCTATATTAT TCCGGCGCGC TATTTTGTCA GCACCCTACA AAGTCTGTTT CTGGCCGGCA ATATTCCGGT CGTGTTAGGC GTTAACGTAC TGTTTTTAAT CGCCTCGGCG GTGATGTTTA TTGGCCTGAC GTGGCTAAAA ACCAAACGAC GGCTGGATTA A
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Protein sequence | MSKSLSWRRV RALCVKETRQ IVRDPSSWLI AVVIPLLLLF IFGYGINLDS SKLRVGILLE QQSQEALDFT HAMTGSPYID ATISDNRHEL IEKMQAGRIR GLVVIPVDFA QQMARDGDSA PIQVITDGSE PNTANFVQGY VEGIWQIWQQ QRAEDRGDTF EPLIDVQTRY WFNPAAISQH FIIPGAVTII MTVIGAILTS LVVAREWERG TMEALLSTEV TRVELLLCKL IPYYFLGMLA MLLCMLVSVF ILGVPYRGSL VILFIITSLF LLSTLGMGLL ISTITRNQFN AAQVALNAAF LPSIMLSGFI FQIDSMPAVI RAVTYIIPAR YFVSTLQSLF LAGNIPVVLG VNVLFLIASA VMFIGLTWLK TKRRLD
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