| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0026 |
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| Symbol | |
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| ID | 6486157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 28418 |
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| End bp | 29425 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642735471 |
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| Product | mannose binding protein FimH |
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| Protein accession | YP_002039253 |
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| Protein GI | 194446333 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.135295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.119008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAC CTCTTTTATT TGCTCTGCTG GCGGGAAGTG TCGTATCGCA GTACGCCTTC
GCAGACGTGT GTAAAAACGT TAACGGTGTA CCTTCCAGTA TTAATTACGA TTTAACGACC
ACTCTGACGG CAGAACAAAA CCAGGTGGGA AAGACGGTTC AACTGGAAAA AAGCCAGGAA
GTTAATGTAC AGGCGGTGTG TCCCGCCGGC GCGTCGACCT ATAGCCAGAC TTATCGCTCC
TATGTGTCGC CATATCCGGT CGTAGAAACG AGCGGTAACT GGAAATATTT AAAGCTGGAC
CCGGACTACC TTGAAGGCGG AATGCGAATT GAGGATTCTT CGGCGGGCGA TATCTATCCG
CCAATGAACA ATGTCCTGAT GGGATATGAT GAAAATGTGA AAGCGGGTCA ACCGTTTTAC
GTTCGTGACT CAAATCTGGA GTTTCAGCTC AAAATTGTTA AACCGTTCGT CGGCACGGTG
AATATTAGTC CTAAGACTAT GTTCAATGTT TATGTCATGA CCGCCGCAGG CGATCCGCTG
ACAGATGTCG TGTACAGCAT TCTTTATAGT GGAACGGTGA CCGTTCCGCA AAGCTGCGAA
ATCAACGCCG GACAAACGAT TCTGGTGAAT TTCGGCGCAT TATACAGCGG CAATTTCAAC
CATGCAGGCC AAAAGCCGGA GGGGGTACGA GCGAAAAAAT TCAGCGTACC GGTAAAGTGC
AGCGGTCTGG ATTCGCAGGT CAATTTAACA ATGCGTCTTA TCGCTACGCC GGATAGCCAC
GTTCCCCAGG CTATCGCTTC GGATAATGCC GATGTCGGCG TAGTGGTCGA AACCGATGAA
GGAAACGCGC TTATCCCCAA TGATGTACAG AGCGTCGCGC CTTTTATCAC CGATAGCGCC
GGACGCGCTA ACATCACATT GCAAGCCTAC CCGGTGAGTA CAACAGGCGA AACGCCAGCG
GAAGGGGCGT TTACCGCGCT GGCCAGTCTG CGAGTGGACT TTGACTAA
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| Protein sequence | MKIPLLFALL AGSVVSQYAF ADVCKNVNGV PSSINYDLTT TLTAEQNQVG KTVQLEKSQE
VNVQAVCPAG ASTYSQTYRS YVSPYPVVET SGNWKYLKLD PDYLEGGMRI EDSSAGDIYP
PMNNVLMGYD ENVKAGQPFY VRDSNLEFQL KIVKPFVGTV NISPKTMFNV YVMTAAGDPL
TDVVYSILYS GTVTVPQSCE INAGQTILVN FGALYSGNFN HAGQKPEGVR AKKFSVPVKC
SGLDSQVNLT MRLIATPDSH VPQAIASDNA DVGVVVETDE GNALIPNDVQ SVAPFITDSA
GRANITLQAY PVSTTGETPA EGAFTALASL RVDFD
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