Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SERP1790 |
Symbol | lacE |
ID | 3241265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus epidermidis RP62A |
Kingdom | Bacteria |
Replicon accession | NC_002976 |
Strand | - |
Start bp | 1836395 |
End bp | 1838143 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637168483 |
Product | PTS system, lactose-specific IIBC components |
Protein accession | YP_189353 |
Protein GI | 57867720 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1440] Phosphotransferase system cellobiose-specific component IIB [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00394] phosphotransferase system, lactose specific, IIC component [TIGR00410] PTS system, lactose/cellobiose family IIC component [TIGR00853] PTS system, lactose/cellobiose family IIB component |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAT TAATAGCATG GATAGAAAAA GGAAAGCCAT TCTTTGAAAA AATATCACGA AATATTTATT TAAGAGCGAT TCGTGATGGA TTTATTGCTG CTATTCCAAT TATCTTATTC TCAAGTATAT TTATTTTAAT TACCTATGTA CCAAATGTGT TTGGTTTTAC TTGGAGTAAA ACTATGGAAG GTATATTGAT GAAACCCTAT AACTATACAA TGGGAATAGT TGGTTTGCTT GTAGCAGGAA CCACAGCTAA ATCTTTAACT GATTCTTACA ATCGAAAACT AGATAAAACG AATCAGATTA ACTTTATTTC GACAATGATG GCAGCTATTT GTGGATTTTT ATTCTTAGCT GCTGATCCTG TTAAAGATGG TGGATTTTCA AGTGCATTTA TGGGAACAAA AGGTTTATTG ACAGCCTTTA TTTCTGCGTT TATTACCGTG ATTGTTTATA ATTTCTTTGT CAAAAGAAAT ATTACCATTA AAATGCCTAA AGAAGTACCA CCAAATATAT CTCAAGTATT TAAAGATATT TTCCCTTTAT CAGCCGTAAT TTTAATTTTG TATGCTTTAG ACTTACTTTC TAGAGCAATA GTCCACACGA ATGTAGCAAA TGCAGTATTA AAAGTATTTG AGCCACTATT TACTGCGGCA GATGGTTGGA TTGGGGTAAC ACTCATATTC GGTGCGTTTG CGTTCTTCTG GTTTGTAGGT ATTCATGGAC CTTCTATTGT TGAACCAGCG ATTGCAGCAA TTACTTATGC GAACCTTGAA ACAAATTTAC ACTTAATACA AGCTGGAGAA CATGCTGATA AAGTAATTAC ACCGGGTACA CAGATGTTCG TAGCAACTAT GGGAGGAACC GGTGCAACAT TAGTTGTTCC ATTTATGTTT ATGTGGTTAA CAAAATCAAA AAGAAATAAA GCGATAGGTA GAGCATCAGT CGTACCTACA TTCTTTGGTG TCAATGAACC CATACTTTTT GGTGCACCAC TAGTACTAAA TCCGGTATTC TTTATACCTT TTATTTTTGC ACCTATAGTA AATATATGGA TTTTTAAATT TTTTGTTGAT GTTTTAAATA TGAATAGTTT TAGTATCTTT TTACCTTGGA CTACTCCTGG TCCACTCGGT ATTGTTATGG GGACTGGATT TGCATTTTGG TCATTTGTGT TAGCAATATT ACTTATTGTT GTTGATGTGA TTATTTACTA TCCATTCTTA AAAGTATACG ATGAACAAGT GCTTGAAGAA GAATTAGGAA ATAAAGAAGC AAATAATGAA TTAAAAGAAA AAGTATCAGC AAACTTTGAT ACGAAAAAAG CCGATGCTAT TTTAGCAACT GCAGGGGCAA GTGAAGCGGA TACTGATGAT ACATCTTCAG TTGATGAAAC AACTTCTACA TCCTCTACAG ATACTATTAG TGAACAAACA AATGTTTTAG TTTTATGTGC AGGTGGAGGT ACAAGTGGTT TACTAGCTAA TGCTTTAAAT AAAGCTGCTG AAGAGTATGA AGTACCAGTA AAAGCAGCAG CAGGTGGTTA TGGTGCACAT ATGGATATTA TGAAAGATTA TCAATTAATT ATCTTAGCAC CACAAGTTGC TTCGAATTTT GAAGATATTA AACAAGATAC TGATCGCTTA GGAATTAAAT TAGCCAAAAC TGAAGGCGCT CAATATATCA AGTTAACAAG AGACGGTGAG GCGGCTTTAG AATTTGTAAA ACAACAATTT AACAATTAA
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Protein sequence | MNKLIAWIEK GKPFFEKISR NIYLRAIRDG FIAAIPIILF SSIFILITYV PNVFGFTWSK TMEGILMKPY NYTMGIVGLL VAGTTAKSLT DSYNRKLDKT NQINFISTMM AAICGFLFLA ADPVKDGGFS SAFMGTKGLL TAFISAFITV IVYNFFVKRN ITIKMPKEVP PNISQVFKDI FPLSAVILIL YALDLLSRAI VHTNVANAVL KVFEPLFTAA DGWIGVTLIF GAFAFFWFVG IHGPSIVEPA IAAITYANLE TNLHLIQAGE HADKVITPGT QMFVATMGGT GATLVVPFMF MWLTKSKRNK AIGRASVVPT FFGVNEPILF GAPLVLNPVF FIPFIFAPIV NIWIFKFFVD VLNMNSFSIF LPWTTPGPLG IVMGTGFAFW SFVLAILLIV VDVIIYYPFL KVYDEQVLEE ELGNKEANNE LKEKVSANFD TKKADAILAT AGASEADTDD TSSVDETTST SSTDTISEQT NVLVLCAGGG TSGLLANALN KAAEEYEVPV KAAAGGYGAH MDIMKDYQLI ILAPQVASNF EDIKQDTDRL GIKLAKTEGA QYIKLTRDGE AALEFVKQQF NN
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