| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1680 |
|---|
| Symbol | rsbU |
|---|
| ID | 3242703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1724457 |
|---|
| End bp | 1725458 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637168366 |
|---|
| Product | sigma factor B regulator protein |
|---|
| Protein accession | YP_189245 |
|---|
| Protein GI | 57867590 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGAAT TCACAAAAAG TTATAAAGCC CTTGTTAAAG AAAGTTTAAT AACTAACAAT
AAAACATTAT TAATTAAGAA ATGTGAAGCA TTCACAAATG AAGTTATAAA GAAAGATGTT
TTACCTGAAG ATATAGTTGA GATACATAAA GATTATATTA ATACATTAGA TTTAACTGAA
GAAGATATTT TAGAAACGCT CGATGTGTTA CAAGAAGTCG TTAAAGGATT TGGATATAGT
TACCGAGATT ACCAAAGACT TGTTAATAAG CTTCAAGTCC ACGATAAAGA AATGGATTTA
GCCTCAAGAC TTCAACAAAC TATGCTGAAA GCTGATATTC CACAATTTGA TAGCATTCAA
ATAGGAGTGA TATCTGTTGC TGCACAAAAA GTAAGTGGTG ATTATTTTAA TCTTATTGAT
CATAAAGATG GCACAATGAG TTTTGCTGTG GCAGACGTTA TAGGTTCAGG TATTCCAGCA
GCTTTAGCTA TGAGTATGAT AAAATTTGGC ATGGATGCTT ATGGACATTC ACAACTACCT
AGTGATGGTT TGAAGCGTTT GAACCGTGTT GTTGAAAAGA ACGTTAACCA AAATATGTTT
GTCACAATGT TTTATGGACT GTATGAAGAG ATGAATCATC TTCTTTACTG TAGCTCAGCT
GGGCATGAAC CTGGCTATAT ATATCGCGCA GAAACTGAAG CGTTTGAGGA AATTGGTGTG
CGAGGAAGAG TTCTAGGTGT GAGTCCCAAA ACACGTTATA GCCAACAGGA AATCCCTATT
TACCTTGATG ATTTAATCAT AATTTTTACT GATGGTGTTA CAGAGGCACG AGATGTAGAG
GGTAATTTTA TTGATAAAGA TAAGTTGTTA GACTTAATTC AAAAATATAA GCATATGCAT
CCACAGGATA TAGTTCAAAT TATTTACGAA GCGATTTTAA AATTACAAAA TCCTGCGAGA
AAAGATGATA TGACTATTTT AATTATAAAA AGAGTAAACT AA
|
|---|
| Protein sequence | MEEFTKSYKA LVKESLITNN KTLLIKKCEA FTNEVIKKDV LPEDIVEIHK DYINTLDLTE
EDILETLDVL QEVVKGFGYS YRDYQRLVNK LQVHDKEMDL ASRLQQTMLK ADIPQFDSIQ
IGVISVAAQK VSGDYFNLID HKDGTMSFAV ADVIGSGIPA ALAMSMIKFG MDAYGHSQLP
SDGLKRLNRV VEKNVNQNMF VTMFYGLYEE MNHLLYCSSA GHEPGYIYRA ETEAFEEIGV
RGRVLGVSPK TRYSQQEIPI YLDDLIIIFT DGVTEARDVE GNFIDKDKLL DLIQKYKHMH
PQDIVQIIYE AILKLQNPAR KDDMTILIIK RVN
|
|---|
| |