Gene SERP0413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSERP0413 
Symbol 
ID3242609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStaphylococcus epidermidis RP62A 
KingdomBacteria 
Replicon accessionNC_002976 
Strand- 
Start bp413507 
End bp414583 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content31% 
IMG OID637167079 
ProductGGDEF domain-containing protein 
Protein accessionYP_188006 
Protein GI57866373 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATGT TTGAAGCTAT CATATATAAC ATATCTGTCA TGGTGGCAGG TATATATTTA 
TTTCATAGGT TACAATATTC TGAAAATAAA AGAATGATTT TTTCTAAAGA ATATGTAACA 
GTACTAATGA CATTCGTTTC TTTACTTTTA GCGGCATACC CTATCCCATT TCAAAACGAA 
TACCTCGTCC ATTTAACATT TGTACCTCTT TTGTTTTTAG GACGTTATAC CAACATGATA 
TATACACTCA CGGCTGCTTT TATCGTATCT TTAGTCGATG TATTTATCTT TGGAAACTCA 
ATTATTTATG GTATTACATT AATCGTTATT GCAGGTATTG TCAGTGCAGT GGGACCATTC 
TTAAAGCAAA ACGATATCAT TTCTTTACTT ATTTTAAATT TGATTAGCAT TATCATTTTG 
TTATTTTTAG CATTATTAAG CCCTATTTAT GAACTCGTAG AGATTTTAGT GCTTATCCCT 
ATTTCATTTA TTATTACAAT TGCTTCAGCA ATAACATTCG TTGATATATG GCACTTTTTC 
TCTTTAGTCA ATCGTTATGA AAATGAAGAT AAATACGATT ATCTTACAGG TCTAGGTAAT 
GTGAAAGAAT TTGATAGACA CTTAAATGAG GTCTCAAGTA AAGCTGAAGA AAAGAAACAA 
AGTTTAGCCT TACTTCTCAT TGATATTGAT GGCTTTAAAG ATGTAAACGA TCATTATTCA 
CACCAATCAG GAGATGCTGT TCTCAAACAA ATGTCTCAAC TATTAAAAAA CTATGTCCCA 
AACCAGTTCA AAATATTTAG AAACGGTGGC GAAGAATTTT CTGTTGTAAT AAGAGATTAC 
ACACTAGATC AAAGCGTGAA ATTAGCAGAA AATATTCGAA GTGGTGTTGA AAAATCTTCT 
TTCCACCTAC CAAACAAAGA AGTAATCAAG CTATCAGTTT CAATTGGTGT AGGATACTTA 
ACTCAAGAAG ATCGTAAATC TCAACGTAAA GTATTTAAAG ATGCTGATGA CATGGTACAT 
GTGGCTAAAA GTGAAGGAAG AAATAAAGTC ATGTTTAATC CTATTGTCAA ATTATAA
 
Protein sequence
MEMFEAIIYN ISVMVAGIYL FHRLQYSENK RMIFSKEYVT VLMTFVSLLL AAYPIPFQNE 
YLVHLTFVPL LFLGRYTNMI YTLTAAFIVS LVDVFIFGNS IIYGITLIVI AGIVSAVGPF 
LKQNDIISLL ILNLISIIIL LFLALLSPIY ELVEILVLIP ISFIITIASA ITFVDIWHFF 
SLVNRYENED KYDYLTGLGN VKEFDRHLNE VSSKAEEKKQ SLALLLIDID GFKDVNDHYS 
HQSGDAVLKQ MSQLLKNYVP NQFKIFRNGG EEFSVVIRDY TLDQSVKLAE NIRSGVEKSS 
FHLPNKEVIK LSVSIGVGYL TQEDRKSQRK VFKDADDMVH VAKSEGRNKV MFNPIVKL