| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0303 |
|---|
| Symbol | abcA |
|---|
| ID | 3243016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 304158 |
|---|
| End bp | 305885 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637166972 |
|---|
| Product | ABC transporter, ATP-binding/permease protein |
|---|
| Protein accession | YP_187899 |
|---|
| Protein GI | 57866212 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAC AAAACCCTTT GTTTTTCTTA TTTAAAAGAC TCTCATGGCC ATATGGGTTA
ATCATTGCAG CGGTTATCAT TACTTCGTTG GGAAGTTTAA GTGGTTTATT AGTACCATTA
TTCACCGGGC GTTTAGTTGA TAAATTTTCC GTCAGTAGTA TTAATTGGGG AATGATAGCT
ATATTTGGCT CGATTTTCTT AGTTAATGCA TTGCTTAGCG GTATAGGCCT ATATTTGTTA
AGTAAAATTG GTGAAAAGAT TATTTATGCG ATTCGTTCAT TATTGTGGGA ACATATTATT
CAATTAAAAA TGCCGTTCTT TGATAAAAAT GAAAGTGGCC AATTAATGAG TCGTCTAACA
GATGATACAA AAGTGATTAA TGAATTTATT TCACAAAAGC TACCTAATTT ATTGCCTTCT
GTTTTAACTT TAATAGGTTC ATTAGTCATG CTATTTATCA TGGATTGGAA ATTAACTTTA
TTAACATTTA TTACTATTCC TGTATTTATT TTAATCATCG TTCCTTTGGG ACGTGTGATG
CAAAAAATAT CTACCAATAC GCAATCTGAA ATTGCGAACT TCAGTGGATT ATTAGGTAGA
GTGCTTACCG AAATGCGTTT AGTTAAAGTA TCTAATACTG AGCGTTTAGA GTTAGATAAT
GCGCATACAA ATCTTAAAAA AATATATAGA TTAGGATTAA AACAGGCTAA AATATCAGCA
GTCGTACAGC CCATTTCTGG TGTTGTTATG CTATTAACTA TTGCGATTAT TTTAGGTTTT
GGTGCATTAG AAATAGGTAC TGGAGCAATT ACTCCTGGAA CACTTATAGC TATGATATTT
TATGTAATCC AGTTATCTAT GCCACTGATT AACTTATCGA CACTAGTTAC GGATTATAAA
AAAGCTGTGG GTGCGAGCAG TCGTATATAT GAAATTATGC AAGAGCCTAT TGAACCTACT
GAAGCTTTAT CAGAATCTAA AGACGTTACG ATCATCGACG GCGAATTAGT ATTTGAGCAC
GTGGATTTTA AATATGACGT TAAAAAGATT TTGGAAGATG TGTCATTTAG TATTCCACAA
GGTGAAGTGA GCGCGTTTGT AGGACCTTCT GGTTCAGGTA AAAGTACGAT TTTTAATTTA
ATTGAGCGCA TGTATGATAT TGAACGTGGA GATATTAAAT ACGGTAATCA AAGTATTTTT
GATATTCCAC TTTCAAAGTG GCGCACAAAA ATTGGTTATG TTATGCAATC TAATTCGATG
ATGAGTGGAA CGATAAGAGA TAATATTTTA TATGGTATTA ATAGAAAAGT TGATGATGAA
GAGTTAATAG AGTATGCTAA ACTAGCTAAT TGTCATGATT TTATTATGCA GTTTGACGAA
GGTTACGACA CGATGGTTGG TGAGCGTGGA CTCAAATTAT CAGGTGGTCA ACGACAAAGG
ATAGATATCG CTAGAAGTTT TGTTAAAAAT CCTGATATTT TGTTATTAGA CGAGGCGACA
GCGAACCTAG ATAGCGAAAG TGAATTGAAA ATTCAAGAAG CACTTGAAAC ACTTATGGAA
GGCAGAACTA CTGTAGTCAT TGCTCATCGA CTTTCAACTA TAAAAAAAGC TGGTCAAATT
GTATTTATTG ATAAAGGTGA AGTTACCGGT AAGGGAACGC ATCATGAATT GATGGCAAGT
CATGATAAAT ACAGACATTT TGTTACATCT CAAAAATTAT CAGATTAA
|
|---|
| Protein sequence | MKEQNPLFFL FKRLSWPYGL IIAAVIITSL GSLSGLLVPL FTGRLVDKFS VSSINWGMIA
IFGSIFLVNA LLSGIGLYLL SKIGEKIIYA IRSLLWEHII QLKMPFFDKN ESGQLMSRLT
DDTKVINEFI SQKLPNLLPS VLTLIGSLVM LFIMDWKLTL LTFITIPVFI LIIVPLGRVM
QKISTNTQSE IANFSGLLGR VLTEMRLVKV SNTERLELDN AHTNLKKIYR LGLKQAKISA
VVQPISGVVM LLTIAIILGF GALEIGTGAI TPGTLIAMIF YVIQLSMPLI NLSTLVTDYK
KAVGASSRIY EIMQEPIEPT EALSESKDVT IIDGELVFEH VDFKYDVKKI LEDVSFSIPQ
GEVSAFVGPS GSGKSTIFNL IERMYDIERG DIKYGNQSIF DIPLSKWRTK IGYVMQSNSM
MSGTIRDNIL YGINRKVDDE ELIEYAKLAN CHDFIMQFDE GYDTMVGERG LKLSGGQRQR
IDIARSFVKN PDILLLDEAT ANLDSESELK IQEALETLME GRTTVVIAHR LSTIKKAGQI
VFIDKGEVTG KGTHHELMAS HDKYRHFVTS QKLSD
|
|---|
| |