Gene SAG1108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSAG1108 
SymbolpotD 
ID1013912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStreptococcus agalactiae 2603V/R 
KingdomBacteria 
Replicon accessionNC_004116 
Strand- 
Start bp1116756 
End bp1117829 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content35% 
IMG OID637316290 
Productspermidine/putrescine ABC transporter, spermidine/putrescine-binding protein 
Protein accessionNP_688117 
Protein GI22537266 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTAGAG TTTATTCCTT TTTAGGCGGT ATTGTTCTTG TTATCCTGAT CCTCTTTGGT 
TTAACCACTT ACTTAGAAAA AAAGAGTAGT TCAACACCTA ACTCAGATAA GTTAGTTATT 
TATAACTGGG GAGACTATAT TGATCCAGCC TTATTAAAAA AATTTACAAA AGAAACTGGA 
ATTGAAGTAC AATACGAAAC GTTTGACTCT AATGAGGCTA TGCACACCAA AATTAAGCAG 
GGTGGGACGA CATATGATAT TGCTGTACCT AGTGATTATA TGATTGACAA AATGATAAAA 
GAAAACCTTC TGGTTAAACT TGATCATTCA AAGATAGCTA ATTGGGATGC TATTGGAGCC 
AGGTTTAAAA ATTTGAGTTT CGATCCTAAA AATAAATATT CGATTCCTTA TTTCTGGGGA 
ACTGTTGGGA TTGTTTATAA TGATCAATTA GTTAAAACTC CTCCTAAACA TTGGGATGAT 
TTATGGCGTC CAGAGTTTCG AAATAAAATC ATGCTAGTTG ATAGTGCACG TGAGGTTATT 
GGAGTTGGTT TAAATTCCTT GGGATATGGA TTGAATACAA AGAACATATC AGAATTAAAA 
GCCGCTTCTA AAAAGTTAGA TGCTCTAACA CCAAACGTTA AGGCTATTGT TGCTGATGAG 
ATGAAAGGCT ATATGATTCA GGGAGATGCA GCGATTGGTG TTACATTCTC TGGAGAAGCA 
CGAGAAATGC TTGATGGGAA CAAGCATTTG CATTACGTTG TTCCTAGTGA AGGATCGAAC 
CTTTGGTTTG ATAATATTGT AATCCCCAAA ACAGTAAAGC ATCGCAAAGA AGCCTATGCC 
TTTATTAATT TCATGATGGA ACCTAAAAAT GCGGCACAAA ATGCAGAATA TATTGGTTAT 
GCGACCCCTA ATCTCAAAGC AAAAGCGCTG TTACCAGCAG ATATCAAAAA TGATAAAGCA 
TTTTATCCTC CTGATAAAAC AATTGATCAT TTAGAAGTTT ATAATAACTT GGGTCAAAAA 
TGGCTTGGTA TTTACAATGA TTTGTACTTA CAATTTAAAA TGTATCGTAA GTAA
 
Protein sequence
MRRVYSFLGG IVLVILILFG LTTYLEKKSS STPNSDKLVI YNWGDYIDPA LLKKFTKETG 
IEVQYETFDS NEAMHTKIKQ GGTTYDIAVP SDYMIDKMIK ENLLVKLDHS KIANWDAIGA 
RFKNLSFDPK NKYSIPYFWG TVGIVYNDQL VKTPPKHWDD LWRPEFRNKI MLVDSAREVI 
GVGLNSLGYG LNTKNISELK AASKKLDALT PNVKAIVADE MKGYMIQGDA AIGVTFSGEA 
REMLDGNKHL HYVVPSEGSN LWFDNIVIPK TVKHRKEAYA FINFMMEPKN AAQNAEYIGY 
ATPNLKAKAL LPADIKNDKA FYPPDKTIDH LEVYNNLGQK WLGIYNDLYL QFKMYRK