| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3165 |
|---|
| Symbol | |
|---|
| ID | 4114963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 3176950 |
|---|
| End bp | 3178080 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638037931 |
|---|
| Product | peptidase M50 |
|---|
| Protein accession | YP_645883 |
|---|
| Protein GI | 108805946 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1994] Zn-dependent proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCT CCTTCAAGAT AGGCCGGGCG TTCGGCATCG ACGTGAAGGT CCACTGGACC
TTCCTGCTGC TCATCGTCTT CTTCGGCCTT CTGGCCTACC AGGCCACCGG GAGCGCCGGG
CGGGCGCTGG CGGTCATCGG CCTGATCCTG GGCCTCTTCG TGTGCGTCCT GCTGCACGAG
TACGGCCACT CCCTCACCGC CCAGCGCCTC GGCATAGAGA TAAACGACAT CACCCTCCTG
CCCATCGGCG GCCTGGCCCG GATGAAGTCC CTCCCCGAGA GGCCCGCCGA CGAGGTGAAG
ATCGCCATCG CGGGCCCCCT GGTGAACGTG GTGCTCGCCC CCGTCTTCTT CGGCGTCGGC
TACCTGCTCG GCTCCTCCCC CTTCGGCGCC ACCGGCTTCG TCTCCGCCGC CGACTCGGCC
GGGCAGTTCT TCTCCTTTCT CGGGGTGGTG AACGTTCTGC TGGCGGTCTT CAACCTGATC
CCGGCCTTCC CCATGGACGG CGGCCGGGTG CTGCGGGGCC TGCTGGCCTC CCGGGTGGGG
CCCGTGCGGG CGACGGACAT CTCCTCGGCC GTGGGACAGG GCTTCGCCCT GCTGTTCTTC
ATCTACGGGC TGCTGGGGGG GAACCTGCTC TTGGTGCTCA TCGCCGTCTT CATCTTCTTC
GGGGCCGGCG GGGAGGCCGA GCTCGTGCGC CAGCGCGAGC TGATGCGCGG CCTCACCGTC
CGCGACGTCA TGGGCACCCG CAGGAGGACG GAGACGGTAA CCCCCTGGCA CACCTTCGGC
CAGGTGCTCG ACTCCGTCAT CCACGGCTAC CAGACCGACT TCCCCGTGGT GGACGAGGAC
GGCAGGCTGG TGGGGATGCT GACGCGCAAC GAGATCATGT CCGCCGCCCA CTCCCCGGAC
CGCTTCAGCG AGGTGCGCCA GATCATGCGC ACCGAGTTCC CCACGATCTC CCCGGAGGCC
GACCTGTTCG CCGAGGGGCA GAAGCTCCTG CAGGAGAGCG GCCTGCGCGC GATCCCGGTG
GTCGAGGACG GGGAGCTGGT CGGGATGCTG ACGGTGGAGG ACATGAGCCA GGCGGCGCTG
CTGCGCGACA TCCGCAAGCT GCAGCAGCGG CCCGCGCCCT GGGGGCGCTG A
|
|---|
| Protein sequence | MGGSFKIGRA FGIDVKVHWT FLLLIVFFGL LAYQATGSAG RALAVIGLIL GLFVCVLLHE
YGHSLTAQRL GIEINDITLL PIGGLARMKS LPERPADEVK IAIAGPLVNV VLAPVFFGVG
YLLGSSPFGA TGFVSAADSA GQFFSFLGVV NVLLAVFNLI PAFPMDGGRV LRGLLASRVG
PVRATDISSA VGQGFALLFF IYGLLGGNLL LVLIAVFIFF GAGGEAELVR QRELMRGLTV
RDVMGTRRRT ETVTPWHTFG QVLDSVIHGY QTDFPVVDED GRLVGMLTRN EIMSAAHSPD
RFSEVRQIMR TEFPTISPEA DLFAEGQKLL QESGLRAIPV VEDGELVGML TVEDMSQAAL
LRDIRKLQQR PAPWGR
|
|---|
| |