| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1294 |
|---|
| Symbol | |
|---|
| ID | 4116957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1316571 |
|---|
| End bp | 1317833 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638036082 |
|---|
| Product | geranylgeranyl reductase |
|---|
| Protein accession | YP_644070 |
|---|
| Protein GI | 108804133 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR02032] geranylgeranyl reductase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.730528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGC GGTACGACCT GATCGTGGTG GGGGCGGGGC CCGGGGGCTC CTCGACCGCC
TACCACGCGG CGAGGTCCGG CCTCAAGACC CTGCTGCTGG ACCGCCAGAG CTTCCCCCGG
GACAAGCCGT GCGGCGACGG GCTCATGCCC CACGCCGCAG CCGAGCTCGC GCTGATGGGG
CTGGGAGGGT GGCTCGAGGA GGAACACCAC GGCGCCTTCA CAGGCTTTAC CATCTACAGC
GAGACGGCGG TGCTGCGGCA GAAGGTCCCG CCCACGCTGC ACGGTCCGCG CGGCTACGTC
GCGCGGCGCA AGGAGACCGA CGCGAGGCTC GCCGGGCGCG CGGCGGAGGC CGGGGCCGAG
CTGATGGAGC AGACGCGGGC GGCCAGGCTG CTGCGCTCGG CCGCGGGGAC CGTCTCGGGG
GTCGAGGCCG AGCGCTCCGG CGAGAGGGTG CGCTTCGCCG CTCCCCTGGT GGTGGTCGCC
GACGGGGTGG GCGGCTTCGC CGCCGGGGGG ATGAAGGCCC GCCAGAACGC CGTGGCCCGC
CGCCAGTACT TCCGGGGCGT CTCCGGGCCC GAGCGGGAGC ACCTCCAGAT CTTCATAACC
CCCGACATGA ACTCGCACCA CGCGGGGTAC GGCTGGGTCT TCCACTTCGG GGACGGAACG
GCGAACGTGG GGGCAGGCGT CTCGACGCGG GCGCTGGAGC GCAGCGGGCG CAACCTCAAG
GACTTCTACG ACCGCTTTCT GGAGGAGCCC CGGGTAAGGG AGCAGCTCGC CGGGGCCGAG
CCCGAAGGCC CCCCGAAGAG CTGGTCGCTG AAGATGGGCA TGTGGGGCGC CCGGCGGTAC
GCGCAGGGGA CGATGCTCGT GGGCGACGCC GGGAGCATGG TCCACCCCAT AAGCGGCGAG
GGGGTGGGCT ACGCCCTGGA GTCCGGGCGG CTGGCCGCGG CCTTCGCCCA CGAGGCCCAC
GCCCGCGGCG ACTTCTCGGC GCGCCTGCTC TCCGGCTACG AGCGGCGCCT GCGGAGGCTG
CGAGCCCGGG AGCACCTCTC CGGCCACGCG CTGGTCAACC TGGTGCCCAA CCTGCGGCTC
CTGGAGCCGC TGTTCAAGGC CTGCGAGGTA GACCCGGAGG CCCGGCGGAC GCTCGTGGAG
GCGTTCACGG GCGACTCTCC GGTCTACAGC CTGCTGCGGC ACCCCCGGGC GCTGGCCCGG
GCGCTGCGGG CGGGGATCAG GGGACGGGCC GGAGCCGCAC GCCGTCCAGG TGGAAGGCGG
TGA
|
|---|
| Protein sequence | MGERYDLIVV GAGPGGSSTA YHAARSGLKT LLLDRQSFPR DKPCGDGLMP HAAAELALMG
LGGWLEEEHH GAFTGFTIYS ETAVLRQKVP PTLHGPRGYV ARRKETDARL AGRAAEAGAE
LMEQTRAARL LRSAAGTVSG VEAERSGERV RFAAPLVVVA DGVGGFAAGG MKARQNAVAR
RQYFRGVSGP EREHLQIFIT PDMNSHHAGY GWVFHFGDGT ANVGAGVSTR ALERSGRNLK
DFYDRFLEEP RVREQLAGAE PEGPPKSWSL KMGMWGARRY AQGTMLVGDA GSMVHPISGE
GVGYALESGR LAAAFAHEAH ARGDFSARLL SGYERRLRRL RAREHLSGHA LVNLVPNLRL
LEPLFKACEV DPEARRTLVE AFTGDSPVYS LLRHPRALAR ALRAGIRGRA GAARRPGGRR
|
|---|
| |