Gene Rxyl_1108 details

Gene Information

• Locus tag: Rxyl_1108
• ID: 4116129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 1140907
• End bp: 1142943
• Gene Length: 2037 bp
• Protein Length: 678 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 638035898
• Product: glycosyl transferase family protein
• Protein accession: YP_643886
• Protein GI: 108803949
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0744] Membrane carboxypeptidase (penicillin-binding protein)

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACCCCC GCTTCGAGAC GGGCACGGAG AGCAAGGGAC GGCGTCCGGG AGGGCTGCTG 
GCGCTGCTCA GGGCTGCCTT TAACGCCGCG CTCCTCGCGG TCGCGGCGGC GCTCGTGCTG 
CTGCTCGGCG CCTACGTCTA CGCGCTGGAG CGCTACGGCG AGGGGATCTC CCGGCGCTAC 
CCGGCGCTCC CCGAGGACTC CTACGTCTAC AGCGCGGACG GCGAGCGGGT CGGCGTGATC 
CCGGCCTCCC AGCGCCGGAG GACCGTCCCC TTCGAGGAGC TCGGCCCCTA CCTGCCGCGG 
GCCGTGGTCG CCGTGGAGGA CCGGCGCTTC TACGAGCACG CCGGGGTGGA CCCGGAGGGC 
GTGCTCCGGG CCGCCTGGAC CGACCTGAGG GCCTGGGAGG TGCAGGAGGG CGGCTCCACC 
ATCACCGAGC AGCTCGTCAA GAACCTCTAC ATCCCGGAGG AGGAGCGTTT CGAGGTCTCC 
TTCTGGCGGC GGCTCCTGCA GGCGTGTCTG GCCCACGCCT ACGAGCAGCG GCACACCAAG 
CGCGAGATCC TCACCGCCTA CCTGAACGCC GTGTACTTCG GGCGGGGGGC CTACGGCGCC 
GAGGCGGCCG CGAGGGCCTA CTTCGGTAAG AGCGCCCGAG AGCTCGACCT CTCCGAGGCG 
GCGGCCCTGG CCGGCTTCCT GCACGCCCCC TCCTCCTACG GCCGGGGCGG CGAGGAGCGG 
GCCGAGGACC GCAGGGACGC CGTGCTGCGG CTGATGCGCG GGCAGGGCGT GATCTCCGGT 
GCCCAGTACA GGAGGGCCGT CTCGCGGGAG CTGCGCTTCT CCCCGCCGGA GGGGCGGGAG 
GACCCCGTCT ACGAGCCCTT TCTGGAGCGG GTGCGGCGCG AGGTCGAGGA GCACCTCGGC 
GAGGAGGCGC TCCGGCGCGG GGGGCTCAGG ATCCGCACCA CCCTCGACCC CCGCCTGCAG 
CGGGTCGCCG CCGCCAGCGC CGCCGACACC CTCTACGCCC CCGGGGACCC CTCGGCCGCC 
GTGGTCAGCG TCGAGCCCCA GAGCGGCGCC ATAAAGGCCC TCTGGGGCCG GGAGGGGGAC 
TTCAACCTCG CCCTCGACGC CCGGAGGCAG CCGGGCAGCG CCTTCAAGCC CGTGGTCCTC 
GCGACCGCGC TCAAGGAGGG CATCTCCCCC TACAGCACCT ACCTCTCCGG CGGCCTCAGC 
CTCGAGTTCC GGGGCGAGGA GTACGTCGTC AACAACTACG GCTACGAGGA GCGCGGCGAG 
ATCTCCCTCG CCGACGCCAT GGCCGTCTCG GACAACACGG TCTTCGTGCG GCTCGCGATG 
GACGTGGGGC TCGAGGAGGT GGCCCGGACC GCCCGCGAGC TCGGGATACG CTCCCCCGTG 
GAGCCCTACC CCTCGACCGC CATCGGGGGG CTCGGGGTGG GGGTGAGCCC GCTGGAGATG 
GCCTCCGCCT ACGCCACCTT CGCCGGCGGG GGGGTCTACC GCGAGCCCTA CGCCGTAGAG 
GAGATCCGGC GCGAGGCCTA CGGCGGGGGC GAGACGCTCT ACGACCACCG GGTCTCCGGA 
CGCCGGGTGC TCGGCGGCAA CCAGGCCGCG GCGGTGACCG ACGTCCTGCG CGGGGTGGTG 
GAGCGGGGGA CCGCCAGCCG CTACCGGGAT CTCGACGCCG AGCTGGGGCG CCCCTCGGCG 
GGCAAGACCG GCACCTCCGA CGGGTTCGCC GACGCCTGGT ACGCCGGCTA CACCCCGCAG 
CTCGCCACCG CGGTGTGGGT CGGCTACCCG GAGGGGCGCC GCTCGATGGC CGGGGTGCAC 
GGCATAGAGG AGGTGGGGGG AGAGACGCTG CCGCTGGACA TCTGGGCGGC GTACATGCGC 
GAGGCCACCC GCGGCGAGCC CGTGTGGGGC TTTCGCGAGC CGGACTACGG GAAGTTCCGG 
GTGGTGGACC GCGCCTACGG CGGCCCCTCC GGGGAGGCCG TAGCCCTCGC GTCTTCGCTC 
CAGAGCAGGA TACGCGCCAT GGTCGATGAG GCGTTGCGGG AAGCCTTCGG GGGGTGA 

 

Protein sequence

MNPRFETGTE SKGRRPGGLL ALLRAAFNAA LLAVAAALVL LLGAYVYALE RYGEGISRRY 
PALPEDSYVY SADGERVGVI PASQRRRTVP FEELGPYLPR AVVAVEDRRF YEHAGVDPEG 
VLRAAWTDLR AWEVQEGGST ITEQLVKNLY IPEEERFEVS FWRRLLQACL AHAYEQRHTK 
REILTAYLNA VYFGRGAYGA EAAARAYFGK SARELDLSEA AALAGFLHAP SSYGRGGEER 
AEDRRDAVLR LMRGQGVISG AQYRRAVSRE LRFSPPEGRE DPVYEPFLER VRREVEEHLG 
EEALRRGGLR IRTTLDPRLQ RVAAASAADT LYAPGDPSAA VVSVEPQSGA IKALWGREGD 
FNLALDARRQ PGSAFKPVVL ATALKEGISP YSTYLSGGLS LEFRGEEYVV NNYGYEERGE 
ISLADAMAVS DNTVFVRLAM DVGLEEVART ARELGIRSPV EPYPSTAIGG LGVGVSPLEM 
ASAYATFAGG GVYREPYAVE EIRREAYGGG ETLYDHRVSG RRVLGGNQAA AVTDVLRGVV 
ERGTASRYRD LDAELGRPSA GKTGTSDGFA DAWYAGYTPQ LATAVWVGYP EGRRSMAGVH 
GIEEVGGETL PLDIWAAYMR EATRGEPVWG FREPDYGKFR VVDRAYGGPS GEAVALASSL 
QSRIRAMVDE ALREAFGG