Gene Rsph17025_0182 details

Gene Information

• Locus tag: Rsph17025_0182
• Symbol: rimM
• ID: 5082121
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodobacter sphaeroides ATCC 17025
• Kingdom: Bacteria
• Replicon accession: NC_009428
• Strand: +
• Start bp: 176590
• End bp: 177099
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640481737
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001166397
• Protein GI: 146276238
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCAGGA CCGACCGCCT CTGTGTGGGT GCCATCGCCG GAGCCTTCGG CGTGAAGGGC 
GAGGTGCGGC TGAAATCCTT CTGCGCCGAG CCGTCCGACA TCGCTTCCTA CGGTCCGCTC 
TTCACCGAGG ACGGCGGCCG CAGCTTTCGC GTCACCCTCA CCCGCCCGGT CGCCGGGGCC 
CTCGGGGCGC GTCTGTCCGG CGTGGCCACC AAGGAAGAGG CCGATGCGCT CCGCGGCGTG 
CAGCTTTATG CCGACCGGGA CCGGCTTCCC TCGCTGGGCG ATGACGAGTT CTATCACGCC 
GATCTGATCG GGCTCGAGGT GCGTGACACC GGCGGCGCCC TGCTCGGGCG TGTCCATGCG 
GTGCACAATC ATGGCGCGGG CGACATCCTC GAGGTGACAG GGGCGGGCCG GCGCGAGGCG 
CTGCTTCTGC CCTTCACCCG GGCCGTGGTG CCGACGGTCG ATCTGTCCAT CGGACGGATC 
GTGGCCGACC CGCCCGAAGG TCTCGAATAG 

 

Protein sequence

MTRTDRLCVG AIAGAFGVKG EVRLKSFCAE PSDIASYGPL FTEDGGRSFR VTLTRPVAGA 
LGARLSGVAT KEEADALRGV QLYADRDRLP SLGDDEFYHA DLIGLEVRDT GGALLGRVHA 
VHNHGAGDIL EVTGAGRREA LLLPFTRAVV PTVDLSIGRI VADPPEGLE