| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3452 |
|---|
| Symbol | |
|---|
| ID | 3836904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 3975253 |
|---|
| End bp | 3977352 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637827573 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_428533 |
|---|
| Protein GI | 83594781 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTGTT CCCAGTTACG GCCCCGGCTT CTGGGCCAGA CGGGGCTCTG CGCCCTGTTG
GTTCTGACCC TGCCGCCCGC CAACGCCCGC GCCGATGACC CGGTTACCGC GCCGCTGGTC
ATCACCAGCG AATTTCTTAA AGACCTCGCC AGCCCCCAGG TCACGCGGAT CGACGCCGAT
GATCCGGCGC GGTCCCCGGT TCAGGAAACC GGCGAGATGT TGCGCTCGGT GCCCGGCGTC
GCCGTCGGCC GCGCCGGCGG CCATGGCTTC GAGCCGGTGA TCCGCGGTCA GCAGCAAGGC
GCCATCGCCG TCATCGCCGA TGACACGATG ACCCTGGGCG GCTGCCCGGG GCGGATGGAT
CCGCCGACCT CGTTTGCCCG TCCGGGGTCC TATGACACCC TCACCGTGAC GCGCGGCTAT
CGCACGGTGA CCAACGGCCC GGGAGCGAGC GGCGGCACCA TCCGCCTGGA CAAGGAGCTG
CCGGCCTGGG ATCAGCCGGT TTCGGGGCGG GCCTTCACCA CCGTCGACTC GAACGGCCTG
GGGGTGACCT CGGGCGCCGA GGCTTCGGCG GCGCTGAACG GCGCCTTCGT GCGGGCCGAG
GGCGGGATCA GCCGCGCCGA CGGCTATGAG GACGGCTCGG GCAACGAGGT CCGTTCGGGC
TTCACCCAGG TTGGCGGCAG TCTGACGGGC GGCTATCAGA GCAAGGACGG CAGCTTCCTG
GAAAGCGCCA TCTCGCTCGA CAAGGTTCTC GACGCCGAAT TCAACGGCAT GATGGACAGT
CCCGAGGCGA CGACGGTCGG CGGACGGATG CGCGCCGGCG TCGAGGTCGA TGGCGAGATC
CTGCGCAAGA TCAGCCTCTC GGCCTATGGC AACCGGGTGG ACCATGTGAT GGACACCTAT
TCCCTGCGCT CCAACGTCAC GTCGTTTTCC GAAACGATCA CCGATTCGAC CACCGTCGGC
GGCAAGGCGA TGGCCGATCT GGCGCTGTGG GGCAGCGCCA CCCAGATCGG CTTCGATGTG
CTGAGCAACA ACCGCACGGC CATCGGCTAT ATGGGCGGCA GTTCGACCAC GGTGAACCGC
CTGCGCAGCT ACATGTGGCC CGATGTGACG ATTTCCGATA TCGGCCTGTT CGCCGAATCG
ACGCTACCGG TCGACGCCAC CACCCGCGTC GTCGCCGGTG GCCGCCTGGA TGTGGTCTAT
GCCAGCGCCG GCTTGGCCGA CCGGGTTCCG GCCGTTTCCT CGATGGGGAT GGCCCGCAGC
GCCAATGATC TCTATCGCGC CTATTACGGC GAAGACTTCG ACGACAGCGT CGAGGTCAAT
CTGGGCGGCG TTCTGCGCCT TGAACACGAC ATTGGCGGCG GGATCACGCT CAATAGCGGG
CTGAGCCGGG CGGTGCGCAC CGCCGATACC ACTGAACGCT CGATCGCCAG CGGCTCGGGA
TCGATGGGAT GGGTGGGCAA TCCCGGCCTC GATCCCGAAA AACACCATCA GATCGATGTC
GGCGCCGCCT GGAAAGGCCA GGATGGCACC GCCTTCATCA GCGCCTATGG CGATATGGTC
GAGGACTATA TCCTAGATAC CCGGGCGCGC GGCAAGGATG GGGTTCTGCG CGCCGATGGG
GCGCGGGTCT ATACCAACAC CACGGCGGTG ATCGGCGGCA TCGAGGCCGG CGGCGATATC
CGCGTGCTCA AGGACTGGAT CATCGATACC AGCCTCGCCG TGACTGTCGG TCAAGATCTC
GATCACGACC GGCCGCTGGC CCAGATCCCG CCGGTGGCCA TGGGTCTTGG TCTGACCTAT
GACGGTGGCG GCTGGACGGT GGGCGGGCGG TTGCGCGGCG CCCTCGCCCA GGGCCGGGCC
GATACCAGCA CCCTGACCGG ATCGGGGCGC GATGTCGATG ACACCCCGGG CTGGGCGACC
GTCGATCTCC ACGCCACCCT GACCAGCTTT CAGCCCTTCG AGATCGGCGT CGGCGTGACC
AACCTGCTGG ACGCCACTTA TGCCGAGCAC CTCAACAAGG CCAATACCTT CGATCCGATG
GCGGTGCAGG TGAACGAACC CGGACGGTCC TTCTATCTGA CCGTCAGCGC CGCTTTCTAA
|
|---|
| Protein sequence | MSCSQLRPRL LGQTGLCALL VLTLPPANAR ADDPVTAPLV ITSEFLKDLA SPQVTRIDAD
DPARSPVQET GEMLRSVPGV AVGRAGGHGF EPVIRGQQQG AIAVIADDTM TLGGCPGRMD
PPTSFARPGS YDTLTVTRGY RTVTNGPGAS GGTIRLDKEL PAWDQPVSGR AFTTVDSNGL
GVTSGAEASA ALNGAFVRAE GGISRADGYE DGSGNEVRSG FTQVGGSLTG GYQSKDGSFL
ESAISLDKVL DAEFNGMMDS PEATTVGGRM RAGVEVDGEI LRKISLSAYG NRVDHVMDTY
SLRSNVTSFS ETITDSTTVG GKAMADLALW GSATQIGFDV LSNNRTAIGY MGGSSTTVNR
LRSYMWPDVT ISDIGLFAES TLPVDATTRV VAGGRLDVVY ASAGLADRVP AVSSMGMARS
ANDLYRAYYG EDFDDSVEVN LGGVLRLEHD IGGGITLNSG LSRAVRTADT TERSIASGSG
SMGWVGNPGL DPEKHHQIDV GAAWKGQDGT AFISAYGDMV EDYILDTRAR GKDGVLRADG
ARVYTNTTAV IGGIEAGGDI RVLKDWIIDT SLAVTVGQDL DHDRPLAQIP PVAMGLGLTY
DGGGWTVGGR LRGALAQGRA DTSTLTGSGR DVDDTPGWAT VDLHATLTSF QPFEIGVGVT
NLLDATYAEH LNKANTFDPM AVQVNEPGRS FYLTVSAAF
|
|---|
| |