| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3299 |
|---|
| Symbol | |
|---|
| ID | 3836746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 3795220 |
|---|
| End bp | 3797370 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637827415 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_428381 |
|---|
| Protein GI | 83594629 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA TCGATACGCT CCTTGCCGCC ATGACGCTGG AAGAAAAAAT CGGTCAGCTG
ACCATGGCGA CAGCGGGTTA TGCAATAACC GGGCCGGTCT TGGGCGGTGA CGTGACCGAC
GGGATCAAGG CCGGCACCAT CGGCAGTCTG CTCAATGTCT GGGGAGCCGA AGCCAGCCGG
ACCATTCAGG CCCTGGCCGT GGAGAACAGC CGGTTGAAGG TGCCGCTGTT CTTTGGCTTC
GACGTGGTTC ATGGCCACCG GACGGTGTTT CCCATCCCCT TGGCCGAGGC GGCGGCCTTC
GATCCGGTTT TGTGGGAGGA GACGGCGCGG GCCAGCGCCG AGGAGGCGGC GGCCGATGGT
CTGCATATGA CCTTCGCGCC GATGATCGAT ATCGCCCGCG ATCCGCGCTG GGGGCGCATC
GCCGAGGGGC CGGGCGAGGA TCCCTGGGTG GGAGCGCGCA TGGCCGAGGC CAAGGTGCGC
GGCTTCCAGG GCGCCGATCT GGCCGATACC ACCCGCGTCT GCGCCACCGC CAAGCATTTC
TGCGGCTATG GCGCGGCCAT CGCCGGGCGC GATTACGCCT CGGCCGAAAT CTCCCTTCAG
ACCCTGCACG AGGTTTATCT GCCGCCTTTC GCCGCCGCGG TGAAGGCGGG GGTGGGCGCG
GTGATGCCGG CCTTCCACGA TATCGGCGGC GTGCCGCTGA CCGCCCATAT CCCGCTGCTG
CGCGACTGGC TGCGCGGCGA GGTGGGCTTT GAAGGGGTGC TGGTCAGCGA CTACAACGCC
ATCGCCGAAC TGATCAAGCA CGGGGTGGCG GGAACCCTGG CCGAGGCGGC GGCCTTAGCG
CTGAACGCCG GGGTTGATAT CGACATGATG GCCACCGCCT ATAGCCGGGG GCTGCCCGAA
GCGCTCGAAC GCGGTCTGAC CGATATGGCC CATATCGACG CCTCGGTGCG CCGGGTGCTG
GGTCTCAAGG AGCGGCTGGG GCTGTTTGAC GACCCTTACG CCCGCTGTGC TCCGCGTGTC
GATGCCGAGG GTGATCGGGC GCGGCGCCTT CTCGCCCGCA AGGCGGCCAG CCGCAGCGTG
GTTTTATTGA GCAATCCGGC CAAGATCCTG CCGCTGCCCT CGCGCCTGCA CCGGCTGGCC
GTGGTCGGTC CCCTGGCCGA CTCCCGGGCC GACATGCGCG GGCCGTGGTC GGCCGCCGGC
CTGCCCGATG ATCCGGTCAG CGTGGTTGAA GGGCTGCGCG ATCTTCTGCC CGCCGATAGC
ATCGCCTTCG CCCCCGGCAT CGATCTGATG GGCAAGGACC TGTCGGGCGA GGAGGCCGCC
CTTGATCTGT GCCGGGCGGC CGAGGCGGTG GTGCTGTGTT TGGGCGAGGC GGCGACGATG
AGCGGCGAGG CCAATTGCCG GGCCGATCCC GGCCTGCCGG GCCAGCAGCG CGCCTTTGCC
GAAAAAGTTT TCGATCTGGG CGTGCCGGTG ATCGTCGTGC TGTTCTCCGG CCGGCCGTTG
ATCCTGCCCT GGCTGATCGA GCGCGCCGAT GCGGTGCTCG CCGCCTGGTT CCCCGGCTGC
GAAGCCGGGC CGGCCATCGC CGAGGTGCTG CTCGGGCTGA GCGATCCCGG CGGGCGCCTG
CCGGTCAGTT GGCCGCGCCA TGTCGGGCAG GTGCCGCTGT TCTTCGGGGC GCGTTCGGGC
GGGCGCCCGG AAAACCCCGA AGACCACTAC ACCAGCAAAT ACATGGACAT GCCCAATACG
CCGCAGTTCC CCTTCGGTCA TGGGCTGTCC TATGGCGACT TCGCTTTGGA GGCTTTGACC
GTTGGCCCCG ACGAGGTGAG CGCCGACGGG GTCATCGAGG TGACGGTCAG TCTGATCAAC
AAGGGCGGGC GCCCGGGCTT GGGCTGCGTT TTCCTGTTCA TCCATGATCC GGTCGCCTCG
GTGGCCCGCC CGCTTCTTGA GCTCAAGGGC GTTCTTCGGG CCGAGGTCGA GGCCGGTGGA
CGCTGTGAGC TGCGCTGGAG CCTGCCGGTG GCCGATCTGG CCTTTCTTGG CGCCGATCTG
ACGCCAAGGA TCGAAGCCGG GGTGATCGAG ATCGCCGTCG GCCGCAGCGC CGACCCCGAG
GGGCTGCTGC GCCGGTCCGT GCGTATCCTC ACCCCCCGGC ACCAGGGGTG A
|
|---|
| Protein sequence | MNRIDTLLAA MTLEEKIGQL TMATAGYAIT GPVLGGDVTD GIKAGTIGSL LNVWGAEASR
TIQALAVENS RLKVPLFFGF DVVHGHRTVF PIPLAEAAAF DPVLWEETAR ASAEEAAADG
LHMTFAPMID IARDPRWGRI AEGPGEDPWV GARMAEAKVR GFQGADLADT TRVCATAKHF
CGYGAAIAGR DYASAEISLQ TLHEVYLPPF AAAVKAGVGA VMPAFHDIGG VPLTAHIPLL
RDWLRGEVGF EGVLVSDYNA IAELIKHGVA GTLAEAAALA LNAGVDIDMM ATAYSRGLPE
ALERGLTDMA HIDASVRRVL GLKERLGLFD DPYARCAPRV DAEGDRARRL LARKAASRSV
VLLSNPAKIL PLPSRLHRLA VVGPLADSRA DMRGPWSAAG LPDDPVSVVE GLRDLLPADS
IAFAPGIDLM GKDLSGEEAA LDLCRAAEAV VLCLGEAATM SGEANCRADP GLPGQQRAFA
EKVFDLGVPV IVVLFSGRPL ILPWLIERAD AVLAAWFPGC EAGPAIAEVL LGLSDPGGRL
PVSWPRHVGQ VPLFFGARSG GRPENPEDHY TSKYMDMPNT PQFPFGHGLS YGDFALEALT
VGPDEVSADG VIEVTVSLIN KGGRPGLGCV FLFIHDPVAS VARPLLELKG VLRAEVEAGG
RCELRWSLPV ADLAFLGADL TPRIEAGVIE IAVGRSADPE GLLRRSVRIL TPRHQG
|
|---|
| |