Gene Rru_A2616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A2616 
Symbol 
ID3836051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand+ 
Start bp3044654 
End bp3045583 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content65% 
IMG OID637826722 
Producthistone deacetylase superfamily protein 
Protein accessionYP_427700 
Protein GI83593948 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACAT TGTTGGTCTC TCATCATGCC TGTGTCGAAC ACGATCCCGG GGCCTTCCAT 
CCGGAATGTC CCGACCGGTT GCGCGCCGTT CAGCGGGTCC TTGAAGCCGA GGACTTCATG 
CTGCTGTTGC GCGACGAAGC TCCCCATGTG ACCCGCGAAC AGCTGCTGCG GGTCCACCCC 
CTCTCGCATG TCGAATTTCT TCTCGATCAC GTGCCGCGCG AGGGCACCTA TCACATCGAC 
GGCGATACGG TGATGTCGCC GGATTCGGGC GAGGCCGCCC TGCGCGCCGC CGGCGGCATG 
GTTCAGGCGG TGGACGCGGT GATGGACAAA TCGGTCCGCA ACGCCTTCGT CGCCGTCCGT 
CCCCCCGGTC ACCACGCCGA ACTGGCCACG GCCATGGGCT TCTGCCTGTT CAACAACGCC 
GCCATCGGCG CCTATCACGC CCGGGCGCGC TGGGGGGCCG AACGCGTCGC GGTGATCGAC 
TGGGACGTTC ACCACGGCAA TGGCACCCAG CATATCTTCT GGGATGATCC GGCGATGTTC 
TATGCCTCGA CCCACGAGGC CCACAGCTTT CCCAATACCG GCTTCGTCGA TGAAACCGGC 
GGTCACGGCA ATATCGTCAA TTGCCCCCTG CGCTCGGGCG CCGACGGCCT GCGCTTTCGC 
GAGGCCTTCA CCGAGCGGAT CACCCCGGCG CTGCGCGCCT TCGCCCCCGA TCTGATCATC 
ATTTCCGCCG GCTTCGACGC CCATGTGATG GACCCGATGG CCAATCTCAA CCTCAAGGTC 
GCCGATTTCG TCTGGGCGAC CGAGCAGGTC CTCGATGTCG CCAATGACGT CTGCGACAGC 
CGGGTGGTGT CGGTGCTCGA AGGCGGTTAC GATCTGACGG CCCTGGCCTC TTGCGTCTCG 
GCTCACGTCA AGACCTTGAT GGAACGCTGA
 
Protein sequence
MTTLLVSHHA CVEHDPGAFH PECPDRLRAV QRVLEAEDFM LLLRDEAPHV TREQLLRVHP 
LSHVEFLLDH VPREGTYHID GDTVMSPDSG EAALRAAGGM VQAVDAVMDK SVRNAFVAVR 
PPGHHAELAT AMGFCLFNNA AIGAYHARAR WGAERVAVID WDVHHGNGTQ HIFWDDPAMF 
YASTHEAHSF PNTGFVDETG GHGNIVNCPL RSGADGLRFR EAFTERITPA LRAFAPDLII 
ISAGFDAHVM DPMANLNLKV ADFVWATEQV LDVANDVCDS RVVSVLEGGY DLTALASCVS 
AHVKTLMER