Gene Rru_A1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1080 
Symbol 
ID3833541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand- 
Start bp1272670 
End bp1273320 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content69% 
IMG OID637825169 
Productthiamine-phosphate diphosphorylase 
Protein accessionYP_426168 
Protein GI83592416 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCGATC CCGCTTGCCG CCTTTATCTG ATCACCCCGC CACGCCTGGA CGACTGGGCC 
GCCTTCGCCG AGACCTTGAA GCGGACCCTG GCCGCCGGGG ATGTCGCCTG CCTGCAGCTG 
CGCATGAAGG ACGAAAGCGA CGACGCCATC CGCCGGGCCG TCGCGGCGAT CCGTCCGGTC 
TGCCATGGCG CCGATGTGGC GCTGCTGCTC AACGACCGAC CCGACCTCGC CAAGGAAACC 
GGCTGCGACG GCGTTCACGT CGGCCAAACC GACGCGTCTT ACGCCCAGGC CCGCGCCATC 
GTCGGCGCCG ACGCCATCGT CGGCGTCACC TGCCACGACA GCCGCCATCT GGCGATGATC 
GCCGGCGAAG CCGGGGCCGA TTACGTGGCC TTCGGCGCCT TCTTCCCCTC CACCACCAAG 
GAACCGCCGA CCCAGGCCGA TCCCGAGATC CTGCGCTGGT GGAGCGAGAT GATGATCGTT 
CCCTCGGTGG CCATCGGCGG CATCACCGTG GAAAACTGCG CGCCCCTGGT GGAAACCGGC 
ACGGATTTTT TGGCCGTGTG CAATGGCGTC TGGGGCCACG CCGAGGGCCC GGAGGCCGCC 
GTCCGCGCCT TCGTCCGCGT CATCGCCGAG GTCTACGCCC AGCCGGACTA A
 
Protein sequence
MSDPACRLYL ITPPRLDDWA AFAETLKRTL AAGDVACLQL RMKDESDDAI RRAVAAIRPV 
CHGADVALLL NDRPDLAKET GCDGVHVGQT DASYAQARAI VGADAIVGVT CHDSRHLAMI 
AGEAGADYVA FGAFFPSTTK EPPTQADPEI LRWWSEMMIV PSVAIGGITV ENCAPLVETG 
TDFLAVCNGV WGHAEGPEAA VRAFVRVIAE VYAQPD